hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid07075/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4193  ( 703 res)   mid07075

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                          256.1    2.9e-72   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/3      84   157 ..     1   121 []    82.8  4.1e-20
RRM        2/3     178   250 ..     1   121 []    83.3    3e-20
RRM        3/3     627   698 ..     1   121 []    93.4  2.6e-23

Alignments of top-scoring domains:
RRM: domain 1 of 3, from 84 to 157: score 82.8, E = 4.1e-20
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      + f+ N+  p+dv+++ L++l              ++k G+v++v +
   mKIAA4193    84    RAFITNI--PFDVKWQSLKDLV-------------KEKVGEVTYVEL 115  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   ++d +                      Gks+G+a VeF+ ee+++kA   
   mKIAA4193   116 LMDAE----------------------GKSRGCAVVEFKMEESMKKA--A 141  

                   ealnaskGkeledgGrptlglrVe<-*
                   e ln   ++ l   Grp   l+V+   
   mKIAA4193   142 EVLN---KHSL--SGRP---LKVK    157  

RRM: domain 2 of 3, from 178 to 250: score 83.3, E = 3e-20
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      t+fV NL  +++v ++ L+e+F              s  G vv+++i
   mKIAA4193   178    TVFVANL--DYKVGWKKLKEVF--------------SMAGVVVRADI 208  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + dkd                      Gks+G + V+Fe   +A +A  i
   mKIAA4193   209 LEDKD----------------------GKSRGIGIVTFEQSIEAVQA--I 234  

                   ealnaskGkeledgGrptlglrVe<-*
                   +++n   G+ l   +rp   ++V+   
   mKIAA4193   235 SMFN---GQLL--FDRP---MHVK    250  

RRM: domain 3 of 3, from 627 to 698: score 93.4, E = 2.6e-23
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       +fV+NL  p+d t+++L++ F              +++G+v +++i
   mKIAA4193   627    QIFVRNL--PFDFTWKMLKDKF--------------NECGHVLYADI 657  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    ++                       +GkskG++ V+Fe++e Ae+A  +
   mKIAA4193   658 KME-----------------------NGKSKGCGVVKFESPEVAERA--C 682  

                   ealnaskGkeledgGrptlglrVe<-*
                   +++n   G++l   Gr+   + V+   
   mKIAA4193   683 RMMN---GMKL--SGRE---IDVR    698  

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