hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid07075/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4193  ( 703 res)   mid07075

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or    230.8      2e-65   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/3      85   156 ..     1    74 []    72.5  9.1e-18
RRM_1      2/3     179   249 ..     1    74 []    67.7  2.5e-16
RRM_1      3/3     628   697 ..     1    74 []    90.8  2.7e-23

Alignments of top-scoring domains:
RRM_1: domain 1 of 3, from 85 to 156: score 72.5, E = 9.1e-18
                   *->lfVgNLppdtteedLkdlFsk.fGpiesikivrDttretgrskGfaF
                       f++N+p+d+ ++ Lkdl ++++G+++ +++  D   + g+s+G+a 
   mKIAA4193    85    AFITNIPFDVKWQSLKDLVKEkVGEVTYVELLMD---AEGKSRGCAV 128  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   VeF+ ee+++kA + ln++ l gr+l+v   
   mKIAA4193   129 VEFKMEESMKKAAEVLNKHSLSGRPLKV    156  

RRM_1: domain 2 of 3, from 179 to 249: score 67.7, E = 2.5e-16
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV NL + + +++Lk+ Fs  G +++++i  D     g+s+G + V
   mKIAA4193   179    VFVANLDYKVGWKKLKEVFSMAGVVVRADILED---KDGKSRGIGIV 222  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe++ +A  A++  nG+ l +r+++v   
   mKIAA4193   223 TFEQSIEAVQAISMFNGQLLFDRPMHV    249  

RRM_1: domain 3 of 3, from 628 to 697: score 90.8, E = 2.7e-23
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV+NLp+d t++ Lkd F+++G ++ ++i+     e+g+skG++ V
   mKIAA4193   628    IFVRNLPFDFTWKMLKDKFNECGHVLYADIKM----ENGKSKGCGVV 670  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe++e Ae+A + +nG++l gre+ v   
   mKIAA4193   671 KFESPEVAERACRMMNGMKLSGREIDV    697  

//