hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB Sequence file: /cdna4/rodent/full/goal/mbh/mbh00584/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4192 ( 1066 res) mbh00584 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- 2oxo_dh_E1 2oxo_dh_E1: 2-oxoglutarate dehydrogenase, 1001.3 2.2e-297 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- 2oxo_dh_E1 1/1 77 1057 .. 1 990 [] 1001.3 2.2e-297 Alignments of top-scoring domains: 2oxo_dh_E1: domain 1 of 1, from 77 to 1057: score 1001.3, E = 2.2e-297 *->flgganlgyieelyeaylkdPssvdpswretfdelpgpgipapeqfh fl+g + +y+ee+y a+l++P sv+ sw+ +f + + p +++ mKIAA4192 77 FLSGTSSNYVEEMYCAWLENPKSVHKSWDIFFRNTNAG-APPGTAYQ 122 ap.spsyfrrlagaapkgtvtag.dpdenaslvkllqllcrayrfrGhlk +p s s ++ a v a + +d+ ++ ++ +q l ray++rGh mKIAA4192 123 SPlSLSRSSLATMAHAQSLVEAQpNVDKLVEDHLAVQSLIRAYQIRGHHV 172 anldPlgysfGsnwdepkppeldls....................yyglt a ldPlg+ + d ++p+++ s+++ + +++ + + +++ygl mKIAA4192 173 AQLDPLGIL-DADLDSSVPADIISStdkldlavfkerlrmltvggFYGLH 221 eedldetfnlgpgvlpkdardgpkklgnglelleylkktycgsiglefdh e dld+ f l+ + l ++e++ l+ yc ig+ef+ mKIAA4192 222 ESDLDKVFHLPTTTFIGG---QEPALP-LREIIRRLEMAYCQHIGVEFMF 267 vpdfeekdWlqekiesglepfqfnseeklsafldrltaaegferflgakf + d e+++W+++k e++ qf+ eek+ +l rl ++ fe+fl +k+ mKIAA4192 268 INDLEQCQWIRQKFETP-GIMQFTNEEKRT-LLARLVRSTRFEEFLQRKW 315 pgakrfsleGldalvPglkelirhsvksGtedvvlGmahrGrlnvlvnvl +krf+leG + l+P lk++i+ s+ G++ v++Gm hrGrlnvl+nv+ mKIAA4192 316 SSEKRFGLEGCEVLIPALKTIIDMSSANGVDYVIMGMPHRGRLNVLANVI 365 gkppeslfdefagkpasdlpsedPlesatdGtGdvkyhlGrfgsdf.ttd +k e +f +f k + +G+Gd+kyhlG++ + + + mKIAA4192 366 RKELEQIFCQFDSKLEAAD----------EGSGDMKYHLGMYHRRInRVT 405 gklvhlplafnPshleivsPvvlGstrarlerlndlGyPvpeetkvlail ++ + l+l++nPshle +Pvv+G+t+a + d +e kv++il mKIAA4192 406 DRNITLSLVANPSHLEAADPVVMGKTKAEQFYCGD-----TEGKKVMSIL 450 lhGdaafaGqGvvqetlnlsslrgysvGGtihivinnqiGfttsnpadar lhGdaafaGqG+v+et ls l+ y + Gt+h+v+nnqiGftt +p+ ar mKIAA4192 451 LHGDAAFAGQGIVYETFHLSDLPSYTTHGTVHVVVNNQIGFTT-DPRMAR 499 stpycsdlakgieaPifhvnaddpeavafafrlaveyrntfkrdvlidlv s+py++d+a+ + aPifhvn+ddpeav ++ ++a+e+rntf++dv++dlv mKIAA4192 500 SSPYPTDVARVVNAPIFHVNSDDPEAVMYVCKVAAEWRNTFHKDVVVDLV 549 gyrrhGhneadePsatqPllydkikkhptprkvyadklvsegvvteedvt +yrr+Ghne+deP +tqPl+y+ i+k++ + + ya+ lvs+gvv + + + mKIAA4192 550 CYRRNGHNEMDEPMFTQPLMYKQIRKQKPVLQKYAELLVSQGVVNQPEYE 599 ehkkWvwnlyrdalekgdd.vvpswrewltaawewlksPpelpeewlpgy e ++ ++a+ ++d+++ + wl + w ++ + p ++ + mKIAA4192 600 EEISKYDKICEEAFTRSKDeKILHIKHWLDSPWPGFFTLDGQPRSMTCPS 649 pdkvpesrlkelgkllgewpeglefhprlakiygdrgkalfdgeklldWg + + +++ + +e + +h l++i++ r + l + +dW+ mKIAA4192 650 TGLEEDVLFHIGKVASSVPVENFTIHGGLSRILKTR-RELVTNRT-VDWA 697 laeslafatllddGtpvrlsGedsgrGtffhrhavlhdqe.sgagytPls lae +af++ll++G+ vrlsG+d++rGtf+hrh vlhdq+ + + +P++ mKIAA4192 698 LAEYMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHDQNvDKRTCIPMN 747 hlhngkgdfavwnsplseggvlgfeyGyaltsPetlvlWeaqfGdfanga hl +++ ++v ns+lse+gvlgfe G+a++sP lvlWeaqfGdf n a mKIAA4192 748 HLWPNQAPYTVCNSSLSEYGVLGFELGFAMASPNALVLWEAQFGDFNNMA 797 qvvidqfisgGeqkWgrkcGlvlllPhGyeGqGPehssgrlerflqlaae q +idqfi G++kW r+ G+vlllPhG eG GPehss+r erflq++++ mKIAA4192 798 QCIIDQFICPGQAKWVRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCND 847 dPryfP..seeklq.rqhqdcnwqvcvpttpaqlfhilrrqaklllrefr dP +P+ ee +q dcnw v++ +tp ++fh+lrrq l fr mKIAA4192 848 DPDVLPdlQEENFDiNQLYDCNWIVVNCSTPGNFFHVLRRQI---LLPFR 894 rPlvllspksllrhPlavssleelsegg.fqpvigeieegglsldpeevk +Pl++++pksllrhP a++s +e+ g++fq vi e g dp +vk mKIAA4192 895 KPLIVFTPKSLLRHPEARTSFDEMLPGThFQRVI--PENGPAAQDPHKVK 942 rlvlcsGkvyydlsvheqrrengdkdlailrieqlyPfPhkglkellepy rl+ c+Gkvyydl e++ n ++++ai rieql PfP+ l + ++y mKIAA4192 943 RLLFCTGKVYYDL-TRERKARNMEEEVAITRIEQLSPFPFDLLLKEAQKY 991 pnlkeivWcqeePlnqGaWgysepyltevlpegdkykdvklryaGrppsg pn e+ Wcqee nqG + y++p+l++++ + yaGr p++ mKIAA4192 992 PNA-ELAWCQEEHKNQGYYDYVKPRLRTTIDRA-----KPVWYAGRDPAA 1035 spavGypslhlkeednllkdal<-* +pa G + hl e + +l a+ mKIAA4192 1036 APATGNKKTHLTELQRFLDTAF 1057 //