hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh25333/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4191  ( 931 res)   msh25333

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PWWP     domain with conserved PWWP motif               146.0    3.9e-39   1
BROMO    bromo domain                                   144.1    1.4e-38   1
PHD      PHD zinc finger                                 38.5    9.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1      68   131 ..     1    39 []    38.5  9.1e-07
BROMO      1/1     302   410 ..     1   118 []   144.1  1.4e-38
PWWP       1/1     800   883 ..     1    84 []   146.0  3.9e-39

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 68 to 131: score 38.5, E = 9.1e-07
                   *->yC.vCgk...g.llqCd.kgCdrwyHv.Clgpple............
                      +C +C++++ g ++qC++++C +++Hv+C++ +++  + ++ ++ ++
   mKIAA4191    68    TCyLCKQkgvGaCIQCHkANCYTAFHVtCAQKAGLymkmepvkeltg 114  

                   .....epdg.wyCprCk<-*
                   ++ +  ++++ yC+ ++   
   mKIAA4191   115 gsatfSVRKtAYCDVHT    131  

BROMO: domain 1 of 1, from 302 to 410: score 144.1, E = 1.4e-38
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      ++ ++++l  ll+++le+l+++        ++a +F++pv+ ke  v
   mKIAA4191   302    MELrLTPLTVLLRSVLEQLQEK--------DPAKIFAQPVSLKE--V 338  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDY d+Ik+PMD+ t++k+le   Y++l++F++DfnL+++N+++YN +d+
   mKIAA4191   339 PDYLDHIKHPMDFATMRKRLEAQGYKNLHAFEEDFNLIVDNCMKYNAKDT 388  

                   evykdAkkLeklfeeklkelpp<-*
                    +y++A++L++     l+++++   
   mKIAA4191   389 VFYRAAVRLRDQGGVVLRQARR    410  

PWWP: domain 1 of 1, from 800 to 883: score 146.0, E = 3.9e-39
                   *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk
                      ++p+++VwAK++G+P++PAl+++pk+++++ +++gv+ip+ppl+vlk
   mKIAA4191   800    LEPLKVVWAKCSGYPSYPALIIDPKMPRVPGHHNGVTIPAPPLDVLK 846  

                   leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-*
                   ++e++++k+ e+l+ VlFF++k+ ++w+++sk++PL+   
   mKIAA4191   847 IGEHMQTKSEEKLFLVLFFDNKRSWQWLPKSKMVPLG    883  

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