hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh25333/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4191  ( 931 res)   msh25333

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Bromodomain Bromodomain                                 118.0    1.7e-31   1
PWWP        PWWP domain                                  76.0    7.7e-19   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Bromodomain   1/1     309   396 ..     1    92 []   118.0  1.7e-31
PWWP          1/1     799   899 ..     1    87 []    76.0  7.7e-19

Alignments of top-scoring domains:
Bromodomain: domain 1 of 1, from 309 to 396: score 118.0, E = 1.7e-31
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l  ll++vle+l+e++  a  f +pV  +  e+PDY ++Ik+PMD+ 
   mKIAA4191   309    LTVLLRSVLEQLQEKD-PAKIFAQPVSLK--EVPDYLDHIKHPMDFA 352  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T++k+l+   Y ++l++F++DfnL+++N+++YN +d+++y++A++   
   mKIAA4191   353 TMRKRLEAQGY-KNLHAFEEDFNLIVDNCMKYNAKDTVFYRAAVR    396  

PWWP: domain 1 of 1, from 799 to 899: score 76.0, E = 7.7e-19
                   *->dfkpgDLVwAKmkGfpwWPAriisqketptsvrkklkri........
                       + p   VwAK++G+p++PA+ii++k++++   + ++ i+ ++ +  
   mKIAA4191   799    VLEPLKVVWAKCSGYPSYPALIIDPKMPRVPGHHNGVTIpappldvl 845  

                   .....mTqeaksnlykVlFFgdhktrawvskkklkPl.ldqdidkfkkde
                   + +++m  ++ + l+ VlFF++++ ++w++k+k +Pl++d+ idk k+ e
   mKIAA4191   846 kigehMQTKSEEKLFLVLFFDNKRSWQWLPKSKMVPLgVDETIDKLKMME 895  

                   krKg<-*
                    r +   
   mKIAA4191   896 GRNS    899  

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