hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00640/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4188  ( 402 res)   mbh00640

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   151.4    9.6e-41   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6     106   143 ..     1    46 []    25.1   0.0097
WD40       2/6     149   190 ..     1    46 []    21.0     0.17
WD40       3/6     195   234 ..     1    46 []    30.0  0.00032
WD40       4/6     237   276 ..     1    46 []    42.3  6.5e-08
WD40       5/6     319   358 ..     1    46 []    24.0    0.022
WD40       6/6     359   399 ..     1    46 []    19.8     0.36

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 106 to 143: score 25.1, E = 0.0097
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                        ++l+tl  H     V++v++s++       +++++g+ g++++Wd
   mKIAA4188   106    HaRQLHTLA-HGE--VVCAVTISSST------QHVYTGGKGCVKVWD 143  

                   <-*
                      
   mKIAA4188     -     -    

WD40: domain 2 of 6, from 149 to 190: score 21.0, E = 0.17
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      ++++++ l+    ++  +++s++  pdg      + l++g++ +t+ 
   mKIAA4188   149    SkTPVAQLDclNRDN--YIRSCKLLPDG------QSLIVGGeASTLS 187  

                   lWd<-*
                   +Wd   
   mKIAA4188   188 IWD    190  

WD40: domain 3 of 6, from 195 to 234: score 30.0, E = 0.00032
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++  ++l+      +++++a+spd       ++ +s+++Dg+i +W
   mKIAA4188   195    TpRIKAELTSSAP--ACYALAVSPDA------KVCFSCCsDGNIVVW 233  

                   d<-*
                   d   
   mKIAA4188   234 D    234  

WD40: domain 4 of 6, from 237 to 276: score 42.3, E = 6.5e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  +r ++gHt+  + +++++s+ g      ++l +g+ D+t+r+W
   mKIAA4188   237    NqAMVRQFQGHTD--GASCIDISDYG------TRLWTGGlDNTVRCW 275  

                   d<-*
                   d   
   mKIAA4188   276 D    276  

WD40: domain 5 of 6, from 319 to 358: score 24.0, E = 0.022
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   + l+ H++   V+s++f + g      ++++s ++D+ +  W
   mKIAA4188   319    RkPEKYQLRLHES--CVLSLKFASCG------RWFVSTGkDNLLNAW 357  

                   d<-*
                       
   mKIAA4188   358 R    358  

WD40: domain 6 of 6, from 359 to 399: score 19.8, E = 0.36
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+   ++++  ++ s+V+s+++s ++      +++++gs+D++  ++
   mKIAA4188   359    TpYGASIFQSKES-SSVLSCDISRNN------KYIVTGSgDKKATVY 398  

                   d<-*
                   +   
   mKIAA4188   399 E    399  

//