hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00640/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4188  ( 402 res)   mbh00640

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       124.9    1.5e-33   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6     108   143 ..     1    38 []    20.5    0.039
WD40       2/6     153   190 ..     1    38 []    13.4      4.4
WD40       3/6     197   234 ..     1    38 []    28.1   0.0002
WD40       4/6     239   276 ..     1    38 []    37.2  3.7e-07
WD40       5/6     321   358 ..     1    38 []    23.5   0.0049
WD40       6/6     363   399 ..     1    38 []    14.6      2.3

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 108 to 143: score 20.5, E = 0.039
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       +l++l +    V++v +s +  +++ +g+  g++k+Wd   
   mKIAA4188   108    RQLHTLaHG-EVVCAVTISSS-TQHVYTGGK-GCVKVWD    143  

WD40: domain 2 of 6, from 153 to 190: score 13.4, E = 4.4
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +       + +++++  pd g+ l+ g++  t+ iWd   
   mKIAA4188   153    VAQLDClNRDNYIRSCKLLPD-GQSLIVGGEASTLSIWD    190  

WD40: domain 3 of 6, from 197 to 234: score 28.1, E = 0.0002
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +a+l+    +++++a+spd  ++++s+++Dg+i +Wd   
   mKIAA4188   197    RIKAELtSSAPACYALAVSPD-AKVCFSCCSDGNIVVWD    234  

WD40: domain 4 of 6, from 239 to 276: score 37.2, E = 3.7e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ ++gHt++ +c+++s   g++l +g+ D+t++ Wd   
   mKIAA4188   239    AMVRQFqGHTDGASCIDISDY-GTRLWTGGLDNTVRCWD    276  

WD40: domain 5 of 6, from 321 to 358: score 23.5, E = 0.0049
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ l+ H+s V +++f+   g++++s + D+ +  W    
   mKIAA4188   321    PEKYQLrLHESCVLSLKFASC-GRWFVSTGKDNLLNAWR    358  

WD40: domain 6 of 6, from 363 to 399: score 14.6, E = 2.3
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +   +   s+V ++++s +  +++++gS D++  +++   
   mKIAA4188   363    ASIFQSkES-SSVLSCDISRN-NKYIVTGSGDKKATVYE    399  

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