hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05138/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4187  ( 562 res)   mpm05138

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.     253.4    1.8e-71   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/3     203   282 ..     1    80 []    87.7  1.4e-21
PDZ        2/3     298   377 ..     1    80 []    85.9  4.8e-21
PDZ        3/3     430   503 ..     1    80 []    89.3  4.5e-22

Alignments of top-scoring domains:
PDZ: domain 1 of 3, from 203 to 282: score 87.7, E = 1.4e-21
                   *->gglGfsivg...........gifvssvvpGspAakaGrkslglLkvG
                       glGfsi+g++++++ ++++ if+++++ G++Aa++Gr     L+v+
   mKIAA4187   203    SGLGFSIAGgtdnphigddsSIFITKIITGGAAAQDGR-----LRVN 244  

                   DvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   D Il+VN   +v+++th  av++lk+ag       v+L v+R++   
   mKIAA4187   245 DCILRVNE-ADVRDVTHSKAVEALKEAGS-----IVRLYVKRRK    282  

PDZ: domain 2 of 3, from 298 to 377: score 85.9, E = 4.8e-21
                   *->gglGfsivg...........gifvssvvpGspAakaGrkslglLkvG
                      +glGfsi+g+ ++++ ++++ i+v+++++G++A+k+G+     L++G
   mKIAA4187   298    KGLGFSIAGgvgnqhipgdnSIYVTKIIEGGAAHKDGK-----LQIG 339  

                   DvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   D++l+VN  + +e +theeav +lk++++      v L+v ++    
   mKIAA4187   340 DKLLAVNS-VCLEEVTHEEAVTALKNTSD-----FVYLKVAKPT    377  

PDZ: domain 3 of 3, from 430 to 503: score 89.3, E = 4.5e-22
                   *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV
                       glGf+ivg+++++gif+s +++G+pA+ +G      L++GD+I++V
   mKIAA4187   430    TGLGFNIVGgedgeGIFISFILAGGPADLSGE-----LRKGDRIISV 471  

                   NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   N  ++++ ++he+a+++lk+ag+      vt++ ++++   
   mKIAA4187   472 NS-VDLRAASHEQAAAALKNAGQ-----AVTIVAQYRP    503  

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