hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05138/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4187  ( 562 res)   mpm05138

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      PDZ domain (Also known as DHR or GLGF)         275.5    6.7e-79   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/3     195   279 ..     1    82 []    97.3  2.9e-25
PDZ        2/3     290   374 ..     1    82 []    91.3  1.9e-23
PDZ        3/3     422   500 ..     1    82 []    97.7  2.2e-25

Alignments of top-scoring domains:
PDZ: domain 1 of 3, from 195 to 279: score 97.3, E = 2.9e-25
                   *->evtlekevkrgglGfsikggsdk.......givvsevlpGsgaAeag
                      e+tle+  +++glGfsi+gg+d+++ +++++i++++++ G gaA+++
   mKIAA4187   195    EITLER--GNSGLGFSIAGGTDNphigddsSIFITKIITG-GAAAQD 238  

                   GrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   GrL+++D Il vN  dv++++h +av+alk++g+  v+L ++   
   mKIAA4187   239 GRLRVNDCILRVNEADVRDVTHSKAVEALKEAGS-IVRLYVK    279  

PDZ: domain 2 of 3, from 290 to 374: score 91.3, E = 1.9e-23
                   *->evtlekevkrgglGfsikggsdk.......givvsevlpGsgaAeag
                      e++l k  ++ glGfsi+gg  +++ +++++i+v+++++G gaA+++
   mKIAA4187   290    EIKLIK--GPKGLGFSIAGGVGNqhipgdnSIYVTKIIEG-GAAHKD 333  

                   GrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   G+L++GD++l+vN + +e ++he+av alk++++  v L+++   
   mKIAA4187   334 GKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSD-FVYLKVA    374  

PDZ: domain 3 of 3, from 422 to 500: score 97.7, E = 2.2e-25
                   *->evtlekevkrgglGfsikggsdk.givvsevlpGsgaAeagGrLkeG
                      +v+l++  +  glGf+i+gg+d++gi++s +l+G g+A+ +G+L++G
   mKIAA4187   422    KVVLHR--GSTGLGFNIVGGEDGeGIFISFILAG-GPADLSGELRKG 465  

                   DqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   D+I+svN +d++  she+a++alk++g+  vt++ +   
   mKIAA4187   466 DRIISVNSVDLRAASHEQAAAALKNAGQ-AVTIVAQ    500  

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