hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00029/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4186  ( 899 res)   mfj00029

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     183.1    2.7e-50   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/3     319   419 ..     1    92 []    80.8  1.6e-19
C2         2/3     457   571 ..     1    92 []    38.1  1.2e-06
C2         3/3     783   888 ..     1    92 []    65.1  8.7e-15

Alignments of top-scoring domains:
C2: domain 1 of 3, from 319 to 419: score 80.8, E = 1.6e-19
                   *->tLtvkiisArnLp............DPYVkvs......kTkvvkktl
                      +++v++++A+ L  +++  + ++++DPY+kvs + ++ +++++ k+l
   mKIAA4186   319    VIRVHLLEAKKLAqkdnflglggksDPYAKVSiglqhcRSRTIYKNL 365  

                   sgfNPvWnEesetFeFevpp...s.LeieVyDk.....dfiGrvtippnn
                      NP+WnE    FeF v + ++++Le+ +yD++++++df+G ++i    
   mKIAA4186   366 ---NPTWNE---VFEFMVYEvpgQdLEVDLYDEdtdkdDFLGSLQIC--- 406  

                   ahqhsadglihlsell.ggrh.kl<-*
                              l +++++   +++   
   mKIAA4186   407 -----------LGDVMkNRVVdEW    419  

C2: domain 2 of 3, from 457 to 571: score 38.1, E = 1.2e-06
                   *->tLtvkiisArnLp............................DPYVkv
                      +L v +  A nLp+++ +  ++  + ++ ++  +++ ++++  YVk+
   mKIAA4186   457    ILVVFLENACNLPrnpfdylngeyrakklsrfvknkasrdpSSYVKL 503  

                   s......kTkvvkktlsgfNPvWnEesetFeFevpp...s.LeieVyDk.
                   + ++++  +k+++++     PvW +    F F v++    +L+++V D++
   mKIAA4186   504 TvgkktfTSKTCPHSK---DPVWSQ---VFSFFVHSvaaEqLCLKVLDDe 547  

                   ..dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                    +  +G +++p              l+++l+    + +   
   mKIAA4186   548 leCALGVLEFP--------------LCRILpCADLtLE    571  

C2: domain 3 of 3, from 783 to 888: score 65.1, E = 8.7e-15
                   *->tLtvkiisArnLp.......DPYVkvs...........kTkvvkktl
                       L+v +  +rnL + ++++ DPYV+++  + ++  +++kT+v++ktl
   mKIAA4186   783    CLRVLVNGCRNLTpctssgaDPYVRIYllperrwasrkKTSVKQKTL 829  

                   sgfNPvWnEesetFeFevpp.....s.LeieVyDk........dfiGrvt
                       P ++E   tFeF vp ++ ++++L + V+++++ ++++++ +G+v 
   mKIAA4186   830 ---EPLFDE---TFEFFVPMgevqkRsLDVAVKNSrplgshrrKELGKVL 873  

                   ippnnahqhsadglihlsell.ggrh.kl<-*
                   i+              ls+ +   + +++   
   mKIAA4186   874 ID--------------LSKQDlIKGFsQW    888  

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