hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00029/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4186  ( 899 res)   mfj00029

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                      225.9    5.7e-64   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/3     320   404 ..     1    88 []   104.0  2.8e-27
C2         2/3     458   556 ..     1    88 []    39.7  6.7e-08
C2         3/3     784   873 ..     1    88 []    84.0  3.1e-21

Alignments of top-scoring domains:
C2: domain 1 of 3, from 320 to 404: score 104.0, E = 2.8e-27
                   *->LrVtvieAknLppkDf...kngksDPYVkvslggdkkdqkkkTkvik
                      +rV+++eAk L+ kD+  +++gksDPY+kvs+g     q  ++++i 
   mKIAA4186   320    IRVHLLEAKKLAQKDNflgLGGKSDPYAKVSIGL----QHCRSRTIY 362  

                   ktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-*
                   k+lNP+WNE+F+F v + ++q+ Le+ +yD+d+++ ddflG  +   
   mKIAA4186   363 KNLNPTWNEVFEFMVYEVPGQD-LEVDLYDEDTDK-DDFLGSLQ    404  

C2: domain 2 of 3, from 458 to 556: score 39.7, E = 6.7e-08
                   *->LrVtvieAknLppkDf...................kngksDPYVkvs
                      L+V +  A nLp   f+  +++ + ++ ++  ++++++ ++ YVk++
   mKIAA4186   458    LVVFLENACNLPRNPFdylngeyrakklsrfvknkASRDPSSYVKLT 504  

                   lggdkkdqkkkTkvikktlNPvWNEtFtFevpppdlqetLeieVyDydrf
                   +g+    +++ +k+ + + +PvW ++F F v+    ++ L ++V D+   
   mKIAA4186   505 VGK----KTFTSKTCPHSKDPVWSQVFSFFVHSVAAEQ-LCLKVLDDELE 549  

                   grddflGevs<-*
                        lG  +   
   mKIAA4186   550 C---ALGVLE    556  

C2: domain 3 of 3, from 784 to 873: score 84.0, E = 3.1e-21
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qkkkTkvikkt
                      LrV v  ++nL p+   ++ +DPYV+++l+++++  ++kkT+v+ kt
   mKIAA4186   784    LRVLVNGCRNLTPCT--SSGADPYVRIYLLPERRWaSRKKTSVKQKT 828  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgr..ddflGevs<-*
                   l P ++EtF+F vp  ++q+++L + V++++ +g+++ + lG+v    
   mKIAA4186   829 LEPLFDETFEFFVPMGEVQKrSLDVAVKNSRPLGShrRKELGKVL    873  

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