hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07034/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4184  ( 905 res)   mbg07034

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PBPe     Eukaryotic homologues of bacterial periplasm   428.4   3.7e-124   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PBPe       1/1     435   812 ..     1   296 []   428.4 3.7e-124

Alignments of top-scoring domains:
PBPe: domain 1 of 1, from 435 to 812: score 428.4, E = 3.7e-124
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                      t++Vtt ile P+vm+kkn+e l     +gn+++eGyC+DL  ++ak
   mKIAA4184   435    TIVVTT-ILESPYVMYKKNHEQL-----EGNERYEGYCVDLAYEIAK 475  

                   ilgFtYelelVpDGkYGskdantgnWnGmIgeLirgeADmAVapLTItae
                   ++  +Y+l +V+DGkYG++d++t+ WnGm+geL++g+AD+AVapLTIt  
   mKIAA4184   476 HVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLV 525  

                   RervVDFTkPFmelGIsILvkkpdkqksslfsFLePf.............
                   Re+v+DF+kPFm+lGIsI++kkp+k+k+++fsFL+P+  +          
   mKIAA4184   526 REEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLayeiwmcivfayi 575  

                   ..................................................
                   + +      ++ ++ + + +++++++++++++++++++ +  ++   + +
   mKIAA4184   576 gvsvvlflvsrfspyewhlednneeprdpqsppdppnefgifnslwfslg 625  

                   ..................................skkLAAfLTvermesp
                      +++ + ++++ +++  ++     +    ++ + +LAAfLTverm+sp
   mKIAA4184   626 afmqqgcdisprslsgrivggvwwfftliiissyTANLAAFLTVERMVSP 675  

                   IssveDLakrnpQtkieyGTvrgssTeefFkrpSkiptysrmwryMssrs
                   I+s+eDLak   Qt+i yGT++++sT efF+r Ski  y++mw yM  +s
   mKIAA4184   676 IESAEDLAK---QTEIAYGTLDSGSTKEFFRR-SKIAVYEKMWSYM--KS 719  

                   kspsvfvkslseGvqrvlnskGnYAFlmEstyleYeasrDpnCdYKLvtv
                   ++psvf k++++Gv+rv++skG++AFl+Est++eY+ +r ++Cd  +++v
   mKIAA4184   720 AEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQR-KPCD--TMKV 766  

                   GevfgskGYGIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<-*
                   G++++skGYG A+pkgS l   +++A+LkLsE G L+kLknKWw++   
   mKIAA4184   767 GGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYD    812  

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