hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj08061/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4183  ( 270 res)   mfj08061

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PA       PA domain                                       76.8    4.6e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PA         1/1      84   182 ..     1   111 []    76.8  4.6e-19

Alignments of top-scoring domains:
PA: domain 1 of 1, from 84 to 182: score 76.8, E = 4.6e-19
                   *->sp.ggktgpLVyagdgsnsdfsaCesrpgsldpkdvkGKIVLcdrGg
                       ++ ++  p   + d +     +C++ + ++ p+++k +I+L +rG+
   mKIAA4183    84    RGqVLAPLPIHGVADHL-----GCDPQTRFFVPPNIKQWIALLQRGN 125  

                   csfaeKaanAqaAGAaGvIiynnpddglevmapetdsndkkdpdshgiPa
                   c+f+eK+  A+ ++A++v+iynn++ +++v++        ++p +++i a
   mKIAA4183   126 CTFKEKISRAAFHNAVAVVIYNNKSKEEPVTM--------THPGTGDIIA 167  

                   vfvskedGeallsyi<-*
                   v++++  G+++lsy+   
   mKIAA4183   168 VMITELRGKDILSYL    182  

//