hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj42218/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4182  ( 225 res)   mfj42218

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S_TKc    Serine/Threonine protein kinases, catalytic    198.8    4.9e-55   1
TyrKc    Tyrosine kinase, catalytic domain               -5.3    8.2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S_TKc      1/1       1   201 [.     1   231 []   198.8  4.9e-55
TyrKc      1/1       1   201 [.     1   280 []    -5.3  8.2e-11

Alignments of top-scoring domains:
S_TKc: domain 1 of 1, from 1 to 201: score 198.8, E = 4.9e-55
                   *->YellkklGkGaFGkVylardkktgrlvAiKvikerilrEikiLkk.d
                                                                  + +
   mKIAA4182     1    --------------------------------------------ElK 3    

                   HPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglrkvlsE.
                    PNIV+++d++  +d+l++VmEy+ G  G+L d+  +         ++E 
   mKIAA4182     4 NPNIVNFLDSYLVgDELFVVMEYLAG--GSLTDVVTETC-------MDEa 44   

                   earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDFGlArql
                   +++ ++r+ l+aLe+LH +++iHRD+K +N+LL  ++ vKl+DFG+++q+
   mKIAA4182    45 QIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMegSVKLTDFGFCAQI 94   

                   .......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyElltGkpP
                   ++++++++t+vGTp++mAPEv++++ Yg+ +vDiWSlG++ +E++ G+pP
   mKIAA4182    95 tpeqskrSTMVGTPYWMAPEVVtrkAYGP-KVDIWSLGIMAIEMVEGEPP 143  

                   Fp..qldlifkkig.............SpeakdLikklLvkdPekRlta.
                   + ++++ + + +i ++++++  ++++ Sp ++d+++++L++d ekR +a+
   mKIAA4182   144 YLneNPLRALYLIAtngtpelqnpeklSPIFRDFLNRCLEMDVEKRGSAk 193  

                   eaLedeldikaHPff<-*
                   e+L+       HPf+   
   mKIAA4182   194 ELLQ-------HPFL    201  

TyrKc: domain 1 of 1, from 1 to 201: score -5.3, E = 8.2e-11
                   *->ltlgkkLGeGaFGeVykGtlkieVAVKtLkedakeeFlrEakiMkkl
                                                                   +l
   mKIAA4182     1    ---------------------------------------------EL 2    

                   GgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrknrpkl
                     k+pNiV++l   + +       + l++vmEy +gG+L d   ++    
   mKIAA4182     3 --KNPNIVNFLDSYLVG-------DELFVVMEYLAGGSLTDVVTETC--M 41   

                   slsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvKIsDFGLs
                     ++    +    +  e+L+ ++++HRD+   N+L+g ++ vK +DFG +
   mKIAA4182    42 DEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMEGSVKLTDFGFC 91   

                   RdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkFtskSDVW
                     ++ +     sk   ++    g+       WmAPE+   + + +k D+W
   mKIAA4182    92 AQITPE----QSKRSTMV----GTP-----YWMAPEVVTRKAYGPKVDIW 128  

                   SFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpkPendlpiS
                   S G++  E+   Ge+PY +      ++ ++l ++ + + ++         
   mKIAA4182   129 SLGIMAIEMVE-GEPPYLN-----ENPLRALYLIATNGTPELQNP----- 167  

                   svtCPdelYd.lMlqCWaedPedRPtFsel..verl<-*
                     +  + ++++   +C + d e+R + +el ++ +l   
   mKIAA4182   168 --EKLSPIFRdFLNRCLEMDVEKRGSAKELlqHPFL    201  

//