hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj42218/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4182 ( 225 res) mfj42218 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pkinase Protein kinase domain 200.9 2e-56 1 Pkinase_Tyr Protein tyrosine kinase -15.8 6.9e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pkinase 1/1 1 201 [. 1 287 [] 200.9 2e-56 Pkinase_Tyr 1/1 1 201 [. 1 272 [] -15.8 6.9e-11 Alignments of top-scoring domains: Pkinase: domain 1 of 1, from 1 to 201: score 200.9, E = 2e-56 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr mKIAA4182 - ----------------------------------------------- - rsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdylse E++ pNIv ++d++ +d+l +V+Ey+ gG +L d+++ mKIAA4182 1 --ELKN------PNIVNFLDSYLVGDELFVVMEYLAGG----SLTDVVT- 37 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldengv ++++ +e ++ ++++ l++le+LH+n +iHRD+K++N+Ll +g mKIAA4182 38 ---ETCM--DEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMEGS 82 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD v K++DFG+++++ t+ +s+ +t vGTp++mAPEv+ ++ yg+kvD mKIAA4182 83 V----KLTDFGFCAQI-TpEQSkRSTMVGTPYWMAPEVVT-RKAYGPKVD 126 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds +WSlG++ +e++ G+pP+ +e ++l+ l+li+ ++ p+l ++ + mKIAA4182 127 IWSLGIMAIEMVEGEPPYLNE---NpLRALYLIATNGTPELQNPEKLS-- 171 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* + ++d++++cL++D +kR +a+e+lqHP++ mKIAA4182 172 -------------PIFRDFLNRCLEMDVEKRGSAKELLQHPFL 201 Pkinase_Tyr: domain 1 of 1, from 1 to 201: score -15.8, E = 6.9e-11 *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseeie mKIAA4182 - ----------------------------------------------- - redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL +l ++pNiV++l + g+ l++V+Ey +gG+L mKIAA4182 1 ------------EL-KNPNIVNFLDSYLV-GDE----LFVVMEYLAGGSL 32 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs d + + ++ ++++ +++e+L++++++HRD+ N+L++ mKIAA4182 33 TDVVTET----CMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLG 78 enlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtskS ++ VK +DFG + +i + + k++ WmAPE+ + + k mKIAA4182 79 MEGSVKLTDFGFCAQI--TPEQ-SKRSTMVGTPYWMAPEVVTRKAYGPKV 125 DVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLpr.PenCPde D+WS G++ E++ Ge+P Y + + + l l++ +G ++Pe+ ++ mKIAA4182 126 DIWSLGIMAIEMVE-GEPP-YLNENPLRALYLIATNGTPELQnPEKLSPI 173 lYdlMlqCWaedPedRPtFsel..verL<-* d +C + d e+R + +el ++ +L mKIAA4182 174 FRDFLNRCLEMDVEKRGSAKELlqHPFL 201 //