hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj29222/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4181 ( 591 res) mfj29222 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 206.0 5.6e-58 5 BACK BTB And C-terminal Kelch 152.7 6.3e-42 1 BTB BTB/POZ domain 144.3 2.1e-39 1 Kelch_2 Kelch motif 93.8 3.4e-24 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 38 146 .. 1 135 [] 144.3 2.1e-39 BACK 1/1 151 253 .. 1 103 [] 152.7 6.3e-42 Kelch_1 1/5 331 377 .. 1 45 [] 50.6 3.4e-11 Kelch_2 1/4 331 377 .. 1 54 [] 32.9 7.5e-06 Kelch_1 2/5 379 433 .. 1 45 [] 56.5 5.6e-13 Kelch_2 2/4 379 433 .. 1 54 [] 13.8 3.8 Kelch_1 3/5 435 481 .. 1 45 [] 23.0 0.0069 Kelch_1 4/5 483 527 .. 1 45 [] 31.4 2.1e-05 Kelch_2 3/4 483 527 .. 1 54 [] 23.6 0.0047 Kelch_1 5/5 529 574 .. 1 45 [] 47.9 2.3e-10 Kelch_2 4/4 529 574 .. 1 54 [] 23.9 0.0038 Alignments of top-scoring domains: BTB: domain 1 of 1, from 38 to 146: score 144.3, E = 2.1e-39 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln lr+q ++DV L++g+ ++f++H+avLaacS YF a+ mKIAA4181 38 LNLLRQQRLFTDVLLHAGN--------RTFPCHRAVLAACSRYFEAM 76 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F+g++ke ++s+v+ + + + pe++e+lL+++Y+++++i+ mKIAA4181 77 FSGGLKE---SQDSEVN--FD-NSIHPEVLELLLDYAYSSRVIIN----- 115 PssckseenvedlLalAadllqipslvdkCeefliksl<-* een+e+lL+++ d+l+ ++++d+C efl k+l mKIAA4181 116 ------EENAESLLEAG-DMLEFQDIRDACAEFLEKNL 146 BACK: domain 1 of 1, from 151 to 253: score 152.7, E = 6.3e-42 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLg++ ++da++c++L+e+++r++l+nF+++ k+e+FlqL+ + +++ mKIAA4181 151 CLGMLLLSDAHQCTKLYELSWRMCLSNFQTIRKNEDFLQLPQDMVVQ 197 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lLss+eL +++E+ V+e +m+W+ +d+ +R ++lpeLL+ VRL+LL+ y mKIAA4181 198 LLSSEELETEDERLVYESAMNWISYDLKKRYCYLPELLQTVRLALLPAIY 247 Llevve<-* L+e v+ mKIAA4181 248 LMENVA 253 Kelch_1: domain 1 of 5, from 331 to 377: score 50.6, E = 3.4e-11 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp pR +++++++ k+Y++GG+ +++ +++v+vYD+ +W+k ++m mKIAA4181 331 PRKEFSACAIGCKVYITGGRGSenGVSKDVWVYDTLHEEWSKAAPML 377 <-* mKIAA4181 - - Kelch_2: domain 1 of 4, from 331 to 377: score 32.9, E = 7.5e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr +++ +g k+y+ GG+ g + +s d++v+d+ +++W mKIAA4181 331 PRKEFSACAIGCKVYITGGR-------GSENGVSKDVWVYDTLHEEW 370 eklpalp<-* +k +++ mKIAA4181 371 SKAAPML 377 Kelch_1: domain 2 of 5, from 379 to 433: score 56.5, E = 5.6e-13 *->pRsgagvvvldgkiYviGGydg..........qslnsvevYDpetnt +R g+g++ l+ ++Yv+GG++ ++ + ++++sl+ ve YDp+tn+ mKIAA4181 379 ARFGHGSAELKHCLYVVGGHTAatgclpaspsVSLKQVEQYDPTTNK 425 Wtklpsmp<-* Wt++++++ mKIAA4181 426 WTMVAPLR 433 Kelch_2: domain 2 of 4, from 379 to 433: score 13.8, E = 3.8 *->pryphasvvpggklyvvGGsfkgnrgtgngde.....sssdllvldp r +h s+ + ++lyvvGG+ +++ ++ + +++ s+ + +dp mKIAA4181 379 ARFGHGSAELKHCLYVVGGH----TAATGCLPaspsvSLKQVEQYDP 421 etnvWeklpalp<-* tn+W+ +++l mKIAA4181 422 TTNKWTMVAPLR 433 Kelch_1: domain 3 of 5, from 435 to 481: score 23.0, E = 0.0069 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp s+a+vv+ + k++++GG + ++ l +v +YD ++n+W+ ++ p mKIAA4181 435 GVSNAAVVSAKLKLFAFGGTSVshDKLPKVQCYDQCENRWSVPATCP 481 <-* mKIAA4181 - - Kelch_1: domain 4 of 5, from 483 to 527: score 31.4, E = 2.1e-05 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- p ++ +++vl+++i+++GG + s +s+++++ et +Wtk+ + + mKIAA4181 483 PWRYTAAAVLGNQIFIMGGDTEFSACSAYKFNSETYQWTKVGDVT 527 * mKIAA4181 - - Kelch_2: domain 3 of 4, from 483 to 527: score 23.6, E = 0.0047 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p+ +a++v+g++++++GG s ++ + ++ et++W mKIAA4181 483 PWRYTAAAVLGNQIFIMGGD---------TEFSACSAYKFNSETYQW 520 eklpalp<-* +k+ ++ mKIAA4181 521 TKVGDVT 527 Kelch_1: domain 5 of 5, from 529 to 574: score 47.9, E = 2.3e-10 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R ++ +v+ ++k+Yv+GGy g q+ ++ ++YDp+ + W +++ p mKIAA4181 529 KRMSCHAVASGNKLYVVGGYFGiQRCKTLDCYDPTLDVWNSITTVP 574 -* mKIAA4181 - - Kelch_2: domain 4 of 4, from 529 to 574: score 23.9, E = 0.0038 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r+++ +v +g+klyvvGG+ g ++ +l ++dp vW mKIAA4181 529 KRMSCHAVASGNKLYVVGGY--------FGIQRCKTLDCYDPTLDVW 567 eklpalp<-* ++ +p mKIAA4181 568 NSITTVP 574 //