hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj00050/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4180  ( 157 res)   mtj00050

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TACC     Transforming acidic coiled-coil-containing p   273.8    2.3e-78   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TACC       1/1       1   156 [.     1   220 []   273.8  2.3e-78

Alignments of top-scoring domains:
TACC: domain 1 of 1, from 1 to 156: score 273.8, E = 2.3e-78
                   *->lkysqkDlDavekkikvevtreEvieKelevlElkeKyEelrkevlE
                             l ++                                    
   mKIAA4180     1    -------LLSL------------------------------------ 4    

                   mgKtnaklnGivaeyEktiaqlieeeqrqkelserelQkvlkEkdqalaD
                                        l e+eqr+k++s++++Q++++Ek+qalaD
   mKIAA4180     5 ---------------------LPEDEQREKSISHQTVQQLVLEKEQALAD 33   

                   LnSlEkSfSDLFkRyEKqKEvleGyrkNEEsLkkcvedyLarikkeEQRY
                   LnS+EkS++DLF+RyEK+KEvleG+rkNEE+Lkkc+++yL+r+kkeEQRY
   mKIAA4180    34 LNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRY 83   

                   qaLKiHAeeKLdrANeeIAqvrskAqaEaaaLqAsLRKEqmkvqSLertL
                   qaLK+HAeeKLdrAN+eIAqvr+kAq+E+aa+qAsLRKEq++v++LertL
   mKIAA4180    84 QALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTL 133  

                   eQKskEneELtKICDeLIaKmgK<-*
                   eQK+kE+eELtKICDeLIaKmgK   
   mKIAA4180   134 EQKNKEIEELTKICDELIAKMGK    156  

//