hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid07007/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4179  ( 500 res)   mid07007

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SPRY     Domain in SPla and the RYanodine Receptor.     119.7    3.2e-31   1
RING     Ring finger                                     49.4    4.9e-10   1
BBOX     B-Box-type zinc finger, protein interaction     42.7      5e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RING       1/1      41    81 ..     1    23 []    49.4  4.9e-10
BBOX       1/1     114   155 ..     1    51 []    42.7    5e-08
SPRY       1/1     372   497 ..     1   145 []   119.7  3.2e-31

Alignments of top-scoring domains:
RING: domain 1 of 1, from 41 to 81: score 49.4, E = 4.9e-10
                   *->CpICle....pvvlpCgH.FCr.Ci............CPlC<-*
                      C++Cle  ++pv+++CgH+FC+ Ci++++++ +++ +CP+C   
   mKIAA4179    41    CSVCLEylkePVIIECGHnFCKaCItrwwedlerdfpCPVC    81   

BBOX: domain 1 of 1, from 114 to 155: score 42.7, E = 5e-08
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      + + lC++H+  ep+ +fC  ed+++ C++C  + +H      r H+
   mKIAA4179   114    RDESLCSQHH--EPLSLFC-YEDQEAVCLICAISHTH------RPHT 151  

                   vvll<-*
                   vv++   
   mKIAA4179   152 VVPM    155  

SPRY: domain 1 of 1, from 372 to 497: score 119.7, E = 3.2e-31
                   *->sGkhYfEVevdtggdkghwrvGvatksvhlypfkvrrkrkggvsllG
                      sG+hY+EVev++   k+hw vGv+++sv+         rkg+  +l+
   mKIAA4179   372    SGRHYWEVEVGD---KTHWAVGVCRDSVS---------RKGELTPLP 406  

                   edkgSwgyrgdggkkyhasefgeeyglpfqepgDviGcflDleaggStis
                   e  g+w +r+++g ky a ++ + ++l+ + +++++G+flD+eag  t+s
   mKIAA4179   407 ET-GYWRVRLWNGDKYAATTT-PFTPLHIKVKPKRVGIFLDYEAG--TLS 452  

                   FykNGkyLgdshilaffdvtfsgpLyPavslgstdgGgesvrlnfGp.p<
                   Fy++ ++   shi++f d tf+++L P +++g + g +++++l++ p+  
   mKIAA4179   453 FYNVTDR---SHIYTFTD-TFTEKLWPLFYPGIRAGRKNAAPLTIRPpT  497  

                   -*
                     
   mKIAA4179     -    -    

//