hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid07007/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4179  ( 500 res)   mid07007

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SPRY     SPRY domain                                    120.9    2.5e-32   1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           57.1    3.7e-13   1
zf-B_box B-box zinc finger                               45.0    1.7e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1      41    81 ..     1    50 []    57.1  3.7e-13
zf-B_box   1/1     116   155 ..     1    46 []    45.0  1.7e-09
SPRY       1/1     372   497 ..     1   154 []   120.9  2.5e-32

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 41 to 81: score 57.1, E = 3.7e-13
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt
                      C +Cle+lkep+     i++CgH      fC++C++rw++  ++ ++
   mKIAA4179    41    CSVCLEYLKEPV-----IIECGHN-----FCKACITRWWEDlERDFP 77   

                   CplC<-*
                   Cp+C   
   mKIAA4179    78 CPVC    81   

zf-B_box: domain 1 of 1, from 116 to 155: score 45.0, E = 1.7e-09
                   *->ervCpeHgekaslfCedDqalLCvvCdesgeHsanklargHtvvpl<
                      e +C++H+e++slfC +Dq++ C  C+ s  H      r Htvvp  
   mKIAA4179   116    ESLCSQHHEPLSLFCYEDQEAVCLICAISHTH------RPHTVVPM  155  

                   -*
                     
   mKIAA4179     -    -    

SPRY: domain 1 of 1, from 372 to 497: score 120.9, E = 2.5e-32
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      sG+hY+EVev++    +thw+vG++++sv           +rkg+  
   mKIAA4179   372    SGRHYWEVEVGD----KTHWAVGVCRDSV-----------SRKGELT 403  

                   llGddegswgydgsggkkyhagesgepyglpfqekgdviGcflDyeagVt
                    l++  g+w +++++g ky a ++ + ++l+ + k+ ++G+flDyeag t
   mKIAA4179   404 PLPET-GYWRVRLWNGDKYAATTT-PFTPLHIKVKPKRVGIFLDYEAG-T 450  

                   isFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadgggeair
                   +sF++ +++     shiy+F+  tf+    ++L P ++ g + g ++a +
   mKIAA4179   451 LSFYNVTDR-----SHIYTFT-DTFT----EKLWPLFYPGIRAGRKNAAP 490  

                   lnfgqlp<-*
                   l + ++    
   mKIAA4179   491 LTIRPPT    497  

//