hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtg/mtg01289/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4178  ( 1796 res)   mtg01289

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BAT2_N   BAT2 N-terminus                                451.0   9.9e-132   1
MFMR     G-box binding protein MFMR                     -69.6       0.24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BAT2_N     1/1       1   187 [.     1   197 []   451.0 9.9e-132
MFMR       1/1     169   362 ..     1   214 []   -69.6     0.24

Alignments of top-scoring domains:
BAT2_N: domain 1 of 1, from 1 to 187: score 451.0, E = 9.9e-132
                   *->MSdrSGQntkakDGksKYstLSLfntYkGksLepGqrgnvapRhGLQ
                           G+++k+kDGk KYs+L+Lf+tYkGksLe+ q+++vapRhGLQ
   mKIAA4178     1    -----GPTAKGKDGK-KYSSLNLFDTYKGKSLEI-QKPAVAPRHGLQ 40   

                   SLGKvAniaRRMPPPAnLPSLkAENkGnDPnvpiVPkDGTGWAskqeqnd
                   SLGKvA iaRRMPPPAnLPSLkAENkGnDPnv++VPkDGTGWAskqeq+d
   mKIAA4178    41 SLGKVA-IARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSD 89   

                   pksspatptqpppaqPkPgvqqpasnLqpprqsiaqENTneVpsgpKSWa
                   pkss+a+++qpp++qP+P++q+pasn qp+r++ a+ENT++Vpsg+KSWa
   mKIAA4178    90 PKSSDASTAQPPESQPLPASQTPASN-QPKRPPTAPENTPSVPSGVKSWA 138  

                   qasnkegghgdGlqansrllrfsaeEFPsLqAPAgDqDKankekeitdsS
                   qas+++g+hgdG++a+++l+rfs+eEFP+LqA AgDqDKa+ke+e++++S
   mKIAA4178   139 QASVTHGAHGDGGRASNLLSRFSREEFPTLQA-AGDQDKAAKERESAEQS 187  

                   <-*
                      
   mKIAA4178     -     -    

MFMR: domain 1 of 1, from 169 to 362: score -69.6, E = 0.24
                   *->MGssEegkpskkseKpssPktsvqesqeqtds...............
                       ++++ +k+ k+ e++ +++ + ++  +q + + ++++++++++ ++
   mKIAA4178   169    QAAGDQDKAAKERESAEQSSGPGPSLRPQNSTtwrdgggrgpddleg 215  

                   .qstvhvYPDWsaSMQAYYGprVappPpyFnsavAsspqPHPYMWGpqqp
                   + s +h  +D  +  Q   +    +pP++           +PY  G    
   mKIAA4178   216 pDSKLHHGHDPRGGLQ---PS---GPPQF-----------PPYR-G---- 243  

                   MmPPYGtPPvPYaAmYPP.GGvYAHPsvPpGShPfspyampSPNG...va
                   MmPP+  PP  Y ++ PP G             P++py  p+P G+++ +
   mKIAA4178   244 MMPPFMYPP--YLPFPPPyG-------------PQGPYRYPTPDGpsrFP 278  

                   evpealsatplsi...EtdpAKssenkdkgsiKKlKGsdGSlglamsign
                    v+++ +++p  ++  E+  + +s  k+ ++    K++d    l    + 
   mKIAA4178   279 RVAGPRGSGP-PMrlvEPV-GRPSILKEDNL----KEFD---QL----DQ 315  

                   gesgKasgssaNgglSq............SsESgstdGSSEdGSDgNsqn
                    + +  +g+  +  ++ + + ++++++++S+E g  +G      D  s+ 
   mKIAA4178   316 ENDDGWAGAHEEVDYTEklkfsdeedgrdSDEEGA-EGHK----DSQSAA 360  

                   as<-*
                   a+   
   mKIAA4178   361 AE    362  

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