hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04205/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4176  ( 401 res)   mbg04205

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PTPc_motif Protein tyrosine phosphatase, catalytic do    37.6    1.7e-06   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PTPc_motif   1/1     121   269 ..     1    92 []    37.6  1.7e-06

Alignments of top-scoring domains:
PTPc_motif: domain 1 of 1, from 121 to 269: score 37.6, E = 1.7e-06
                   *->tvkhyhytgWpDhvekdsgvPe.dsileflravrk............
                      +vk   y++  +      +  ++    ++l++++   ++  +  ++ 
   mKIAA4176   121    KVKDIVYPNIEES-----HWLSsLESTHWLEHIKLvltgaiqvadqv 162  

                   .....PivVHCSAGvGRTGtfvaidillqq....................
                   ++++++++VHCS+G++RT+++ ++ +l+ ++  ++ ++ +   +++  + 
   mKIAA4176   163 ssgksSVLVHCSDGWDRTAQLTSLAMLMLDsfyrtiegfeilvqkewisf 212  

                   ........................vdifdtvkelRsqRpgmvqteeQYlF
                   +++  ++ +++++++ + ++++  + + d+v+++ +q p +++ +e +l 
   mKIAA4176   213 ghkfasrighgdknhadadrspifLQFIDCVWQMSKQFPTAFEFNEGFLI 262  

                   lyralle<-*
                       +l+   
   mKIAA4176   263 TVLDHLY    269  

//