hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj00074/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4175 ( 360 res) mfj00074 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PP2Cc Serine/threonine phosphatases, family 2C, ca 265.1 5.4e-75 1 PP2C_SIG Sigma factor PP2C-like phosphatases 25.3 0.00022 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PP2Cc 1/1 77 349 .. 1 338 [] 265.1 5.4e-75 PP2C_SIG 1/1 103 351 .. 1 250 [] 25.3 0.00022 Alignments of top-scoring domains: PP2Cc: domain 1 of 1, from 77 to 349: score 265.1, E = 5.4e-75 *->es.sgknlglrygl...gessmqgwrkpmEDahvirp.........f + ++++ + + + ++ ++ s+qg+r +mED++ + ++ +++++++ mKIAA4175 77 VLeAEFSKTWEFKShnvAVYSIQGRRDHMEDRFEVLTdlankthpsI 123 fgVfDGHGGseaakflsknlheilaeelsfdkdeslkeneelkdepesse fg+fDGHGG aa+++ ++l+e+l+++l+ + + mKIAA4175 124 FGIFDGHGGETAAEYVKSRLPEALKQHLQDYEKD---------------- 157 rlngdksledveealrkaFlrtdeei............sTAvvalirgnk ++s + +l++ +l++d e+ ++ + + ++ ++T+++al+++++ mKIAA4175 158 ---KENSVLTYQTILEQQILSIDREMlekltvsydeagTTCLIALLSDKD 204 lyvANvGDSRavLcrngkdswegvrtysavqLteDHkpsnedEreRIeaa l vANvGDSR vLc +++ a++L+ DHkp++ +Er+RI++a mKIAA4175 205 LTVANVGDSRGVLCDKDG---------NAIPLSHDHKPYQLKERKRIKRA 245 GGevepidrefvsngggvvwRvnGvvisLavsRalGDfelKk.kedelie GG f+s++g wRv G La+sR+lGD+ lK+ + mKIAA4175 246 GG--------FISFNGS--WRVQGI---LAMSRSLGDYPLKNlN------ 276 enrlyekfdprlpgkepyvsaePevtvvelsqtlvptedddfliLASDGL v+++P++ + +l+ + +f+iLASDGL mKIAA4175 277 -----------------VVIPDPDILTFDLD-----KLQPEFMILASDGL 304 WDvlsnqeavdivrkhlrkgddkevksaaqelaradslrskkhndpkeaa WD +sn+eav +++++l +p a mKIAA4175 305 WDAFSNEEAVRFIKERL--------------------------DEPHFGA 328 klLvdlAl....kDNiTvvvv<-* k +v + ++ DNiTv+vv mKIAA4175 329 KSIVLQSFyrgcPDNITVMVV 349 PP2C_SIG: domain 1 of 1, from 103 to 351: score 25.3, E = 0.00022 *->vdggliaayyeeatqvgGDyydvialpegkdrlliaiaDvmGwAkGl ++ + + ++ + + + ++ i D++G + mKIAA4175 103 DHMEDRFEVLTDLAN-----------KTH--PSIFGIFDGHG--GET 134 aAalamsmlrsalrtllse..............slsqilerlnraiyen. aA+ + s+l +al+++l++ +++++++ + ++ l+q + ++r + e+ mKIAA4175 135 AAEYVKSRLPEALKQHLQDyekdkensvltyqtILEQQILSIDREMLEKl 184 neeedgmfaTlflalyvldfatgtlsyanaGhsppyllraqdgglveils d+ ++T+++al+ +++ l +an+G+s++ l + +g ++ls mKIAA4175 185 TVSYDEAGTTCLIALL----SDKDLTVANVGDSRGVLCD--KDGNAIPLS 228 dtslvqela.gggideedakhhprknvlgapLGlepdve........... + + +++ e + ++ +++++ + + + + +++ ++ + mKIAA4175 229 H------DHkPYQLKERKRIKRAGGFISFNGSWRVQGILamsrslgdypl 272 .........vdvrevtlep..GDllllyTDGltearseqgeffgeerLee ++ + +++d+ +++l++ + + ++l++DGl++a f +e+ + mKIAA4175 273 knlnvvipdPDILTFDLDKlqPEFMILASDGLWDA-------FSNEEAVR 315 llealv.gsepqeiaqrilaellefaggangeDDiTvvvvkv<-* +++ ++ + ++ + l +f g+ +D+iTv+vvk+ mKIAA4175 316 FIKERLdEPHFGAKSI----VLQSFYRGC--PDNITVMVVKF 351 //