hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00074/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4175  ( 360 res)   mfj00074

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PP2C     Protein phosphatase 2C                         226.7    3.3e-64   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PP2C       1/1      91   344 ..     1   305 []   226.7  3.3e-64

Alignments of top-scoring domains:
PP2C: domain 1 of 1, from 91 to 344: score 226.7, E = 3.3e-64
                   *->ldvgvsrmqgwrksmeDahialknlnssssgkdswsffavfDGhgGs
                      + v+v ++qg+r++meD+   l +l    + k + s+f++fDGhgG+
   mKIAA4175    91    HNVAVYSIQGRRDHMEDRFEVLTDL----ANKTHPSIFGIFDGHGGE 133  

                   qaakyagkhlhktilaerksfpegdpwEmklsdledalkesfleadtdee
                    aa+y +++l+ + l+   +++e d       +++  l  ++      + 
   mKIAA4175   134 TAAEYVKSRLP-EALKQHLQDYEKD-------KENSVLTYQTIL--EQQI 173  

                   lrsaeassankvltkedlssGsTAvvalirgnkklLyVANvGDSRavLcr
                   l   + + +   lt   +  G+T+++al+++++  L VANvGDSR+vLc+
   mKIAA4175   174 LSIDREMLEK--LTVSYDEAGTTCLIALLSDKD--LTVANVGDSRGVLCD 219  

                   ngnaikwavtLteDHkPsnedEreRIeaaGGfvsrvsgngRvnGvfLavS
                   +++++    +L+ DHkP+  +Er+RI++aGGf+s  +g +Rv G  La+S
   mKIAA4175   220 KDGNAI---PLSHDHKPYQLKERKRIKRAGGFIS-FNGSWRVQGI-LAMS 264  

                   RAfGDfelKpgsklgpeesleanyeyikspeqlVtaePdvtsstdltpdk
                   R++GD+ lK        +               V+++Pd+  + dl+   
   mKIAA4175   265 RSLGDYPLKN-------L-------------NVVIPDPDIL-TFDLDKLQ 293  

                   DeFliLAcDGLWDvvsdqevvdivrselsdgnrsagdpmeaaeklvdeai
                    eF+iLA+DGLWD +s++e+v +++++l++       p+  a+ +v  + 
   mKIAA4175   294 PEFMILASDGLWDAFSNEEAVRFIKERLDE-------PHFGAKSIVLQSF 336  

                   argseDni<-*
                    rg+ Dni   
   mKIAA4175   337 YRGCPDNI    344  

//