hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj01044/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4171  ( 668 res)   mtj01044

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAD      Protein-arginine deiminase (PAD)              1742.9          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAD        1/1      15   668 .]     1   688 []  1742.9        0

Alignments of top-scoring domains:
PAD: domain 1 of 1, from 15 to 668: score 1742.9, E = 0
                   *->MAqqRtVrlslekPThAVCVlGtetivDIyssaPkGaksFsvsgSpG
                      M      r sl  P      l   +      ++P+G+++F+v+g+pG
   mKIAA4171    15    MPELPCLRKSLILP-----ILPALLR-----AVPEGTDMFEVYGTPG 51   

                   VkVyVvhdGpervkepaGksrWPLdpglevvlsMkaaSkelgDqKVriSY
                   V++yV+++ +er +e+a+++rW++++gle+++ M+++S++l+D++V+i+Y
   mKIAA4171    52 VDIYVSPS-MERSRERADTRRWCFNKGLEIIVIMNSPSNDLNDSHVQIAY 100  

                   ygeqekaplarAlLYLTaVdISLdvDtgRtGkVkPakslvDKatWtWGPd
                   +++ e++pla+A+LYLT+VdI+Ld+D++++++++  +s+vDK++W WGPd
   mKIAA4171   101 HSSREHLPLAYAVLYLTCVDITLDCDMNCADRQD--RSFVDKRQWVWGPD 148  

                   GqGAILLVNCDRDdpkSramGDssePqsqLtDleDdkVlsleDLqDMSpM
                   G+GAILLVNCDRD++ S a+           D++D+ V++l+DL+DMS+M
   mKIAA4171   149 GYGAILLVNCDRDNVDSNAQ-----------DNCDQYVRCLQDLEDMSVM 187  

                   vLsTkGPddLFdgHkLVLhvsfsDsdkVrVFyatggekslsrYkhVLGPq
                   vL+T+GP+  F +H+L+Lh+s++D++++rVF+++g+e+s++ Yk+VLGP+
   mKIAA4171   188 VLRTQGPEAPFEDHRLILHTSSCDAERARVFHVCGPEDSCESYKCVLGPD 237  

                   klSYeVerlgGeheidFYVEGLaFPDasFsGLvslhvSLLDtsneeLpEt
                   ++SYeV+rl+G +e++F+VEGL+FPDa+F+GL+s+hv+LLD+sne+ +Et
   mKIAA4171   238 RMSYEVPRLKG-YEERFFVEGLSFPDAGFPGLISFHVTLLDDSNEDFSET 286  

                   piFTDTVvFRvAPWIMTPNTlPPlEVYVCsvkDtHGSNedFLkavstLae
                   piFTDT vFRvAPWIMTP+TlPPlEVYVC+v++    N++F++av++La+
   mKIAA4171   287 PIFTDTAVFRVAPWIMTPSTLPPLEVYVCRVRN----NTCFVEAVEELAR 332  

                   KAkCkLtiCPqeENRnDRWIQDEmEfGYIqAPHKtfPVVFDSPRnRgLKD
                   KA+CkLtiCPq+ENRnDRWIQDEmE+GY+qAPHKt+PVVFDSPRn++L++
   mKIAA4171   333 KAGCKLTICPQAENRNDRWIQDEMELGYVQAPHKTLPVVFDSPRNGELQG 382  

                   FPvKriLGPDFGYVTREppfagvSgLDSFGNLEVSPPVtVrGKEYPLGRI
                   FP+KriLG+DFGYVTREp +++vSgLDSFGNLEVSPPV+++GKEYPLGRI
   mKIAA4171   383 FPYKRILGLDFGYVTREPKDSSVSGLDSFGNLEVSPPVVANGKEYPLGRI 432  

                   LIGsSgFPkSgGRrMaqvVRDFLhAQqVQAPVELySDWLsVGHVDEFLSF
                   LIG++ +P+S+GRr++qvVR+FLhAQ+VQ++VEL++DWL+VGHVDEFLSF
   mKIAA4171   433 LIGGN-LPGSRGRRVTQVVRNFLHAQKVQPLVELFVDWLAVGHVDEFLSF 481  

                   VPapDkKGFRLLLASPsACYqLFQEKQeeGhGEAllFeGLkgkrkrr.Is
                   VPapD+KGFRLLLASP+AC++LFQEKQ++GhG++llFeG++g+r+++++s
   mKIAA4171   482 VPAPDGKGFRLLLASPGACFRLFQEKQKWGHGRSLLFEGVIGDRRVQtVS 531  

                   IneILSnesLrrfNayvQsCIDWNRevLKRELGLaEsDIIDIPQLFklke
                   In+IL n+sL++fN+++QsCIDWNRevLKRELGLaE+DIIDIPQLFk ++
   mKIAA4171   532 INQILNNQSLINFNKFAQSCIDWNREVLKRELGLAEGDIIDIPQLFKTEK 581  

                   nsRGnPkAeAFFPdMVNMlVLGKhLGIPKPFGPiINGrCCLEEKVrSLLE
                   ++     A+AFFPd+VNMlVLGKhLGIPKPFGPiINGrCCLEEKVrSLLE
   mKIAA4171   582 RK-----AVAFFPDLVNMLVLGKHLGIPKPFGPIINGRCCLEEKVRSLLE 626  

                   PLGLhCtFIdDflsYHklhGEVHCGTNVRRKPFAFKWWhMVP<-*
                   PLGLhCtFIdDf++YH+lhGEVHCGTNVRR+PFAFKWWhMVP   
   mKIAA4171   627 PLGLHCTFIDDFTPYHMLHGEVHCGTNVRREPFAFKWWHMVP    668  

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