hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg21326/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4170 ( 1376 res) mbg21326 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IG Immunoglobulin 218.7 5.3e-61 5 IGc2 Immunoglobulin C-2 Type 205.2 5.7e-57 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IGc2 1/5 340 407 .. 1 56 [] 42.7 5e-08 IG 1/5 334 418 .. 1 58 [] 50.9 1.7e-10 IGc2 2/5 505 580 .. 1 56 [] 49.7 3.9e-10 IG 2/5 499 591 .. 1 58 [] 51.8 8.8e-11 IGc2 3/5 1014 1083 .. 1 56 [] 43.1 3.6e-08 IG 3/5 1008 1094 .. 1 58 [] 36.0 5e-06 IGc2 4/5 1141 1209 .. 1 56 [] 51.9 8.3e-11 IG 4/5 1135 1220 .. 1 58 [] 48.8 6.9e-10 IGc2 5/5 1240 1309 .. 1 56 [] 19.0 0.058 IG 5/5 1234 1320 .. 1 58 [] 31.3 0.00013 Alignments of top-scoring domains: IGc2: domain 1 of 5, from 340 to 407: score 42.7, E = 5e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG V+L C++ g p p+++W+ +gk+l+++++ + + ++ +Lt mKIAA4170 340 PEGSRVQLDCIVVGIPPPQVRWYCeGKELEnspdihivqagNLHSLT 386 iknvsleDsGlYtCvArNsvg<-* i ++ +eD G+Y+C+A+N g mKIAA4170 387 IAEAFEEDTGRYSCFASNIYG 407 IG: domain 1 of 5, from 334 to 418: score 50.9, E = 1.7e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ +v eG++v+L C + + ++++++Wy ++ ++++ + + + mKIAA4170 334 LRsREVPEGSRVQLDCiVVgipppQVRWYcegkelenspdihivqag 380 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + ++LtI ++ +eD+ G Y C a++ +g++s +++++++ mKIAA4170 381 nlhsLTIaEAFEEDT---GRYSCFASniYGTDST--SAEIYIE 418 IGc2: domain 2 of 5, from 505 to 580: score 49.7, E = 3.9e-10 *->leGqsVtLtCpasgdpvpnItWlk.gkplp................. eGq V+++C++ g+p p + W+++g+ ++++++ + ++++++ + mKIAA4170 505 SEGQLVVFECRVKGAPSPKVEWYReGTLIEdspdfrilqkkprsmae 551 ..sgstLtiknvsleDsGlYtCvArNsvg<-* ++ tL i +v eDsG tC+A+N+ g mKIAA4170 552 peEICTLVIAEVFSEDSGCFTCTASNKYG 580 IG: domain 2 of 5, from 499 to 591: score 51.8, E = 8.8e-11 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++++++eG+ v+++C++++ +++ + Wy+ ++ ++++ + +++ mKIAA4170 499 LQnLSASEGQLVVFECrVKgapspKVEWYregtliedspdfrilqkk 545 ............LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtV +++ + +L+I +v eDs G +tC+a++++g++ss ++L V mKIAA4170 546 prsmaepeeictLVIaEVFSEDS---GCFTCTASnkYGTVSS--IAQLDV 590 l<-* + mKIAA4170 591 R 591 IGc2: domain 3 of 5, from 1014 to 1083: score 43.1, E = 3.6e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.............sgst eG +Vt+tC+ g pvp + W+k+gk++++++++ + ++++++ + mKIAA4170 1014 TEGSPVTFTCKIVGIPVPKVYWFKdGKQISkrnehckmrregdGTCS 1060 LtiknvsleDsGlYtCvArNsvg<-* L+i++ +D+G+Yt A N+ g mKIAA4170 1061 LHIESTHGDDDGNYTIMAANPQG 1083 IG: domain 3 of 5, from 1008 to 1094: score 36.0, E = 5e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ v eG++vt+tC++ + + + ++W++++++ ++++ + + ++ mKIAA4170 1008 LKhFRVTEGSPVTFTCkIVgipvpKVYWFkdgkqiskrnehckmrre 1054 ......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++++ +L+I++ +D G+Yt +a ++ g +s+ + +L V+ mKIAA4170 1055 gdgtcsLHIeSTHGDDD---GNYTIMAAnpQGRISC--SGHLMVQ 1094 IGc2: domain 4 of 5, from 1141 to 1209: score 51.9, E = 8.3e-11 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL +eG+ +L C++sg p p+ tWl +g+p+ ++ +++ ++++ +L mKIAA4170 1141 HEGRLCRLDCKVSGLPPPELTWLLnGQPVLpdashkmlvretGVHSL 1187 tiknvsleDsGlYtCvArNsvg<-* i + + D+G+YtCvA+N+ g mKIAA4170 1188 LIDPLTQRDAGTYTCVATNKTG 1209 IG: domain 4 of 5, from 1135 to 1220: score 48.8, E = 6.9e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++++ eG +L C++s+ +++++tW+ ++++ ++ +++ + mKIAA4170 1135 PGdMVAHEGRLCRLDCkVSglpppELTWLlngqpvlpdashkmlvre 1181 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ ++L I+++t D+ GtYtC+at++ g+ s + +LtV mKIAA4170 1182 tgvhsLLIdPLTQRDA---GTYTCVATnkTGQNSF--SLELTVV 1220 IGc2: domain 5 of 5, from 1240 to 1309: score 19.0, E = 0.058 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgst.. eG +V+L+ ++ g p p + W+k+++ +p ++++ + ++++ ++ mKIAA4170 1240 PEGHPVRLEGRVIGMPPPVFYWKKdNETIPftrerismhqdTTGYvc 1286 LtiknvsleDsGlYtCvArNsvg<-* L i++++++D+G Yt +A N++g mKIAA4170 1287 LLIQPAKKSDAGWYTLSAKNEAG 1309 IG: domain 5 of 5, from 1234 to 1320: score 31.3, E = 0.00013 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ v eG +v+L+ ++ + +++ ++W++++ + + ++ + + +++ mKIAA4170 1234 LQnSGVPEGHPVRLEGrVIgmpppVFYWKkdnetipftrerismhqd 1280 ......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ L I++++++D+ G Yt a++ +g +s+ +++L ++ mKIAA4170 1281 ttgyvcLLIqPAKKSDA---GWYTLSAKneAGIVSC--TARLDIY 1320 [output cut off at A = 10 top alignments] //