hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg21326/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4170 ( 1376 res) mbg21326 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- I-set Immunoglobulin I-set domain 499.8 2e-146 5 ig Immunoglobulin domain 168.0 1.6e-46 5 V-set Immunoglobulin V-set domain 34.2 3.1e-06 4 Extensin_2 Extensin-like region -140.0 0.52 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ig 1/5 342 402 .. 1 65 [] 45.4 1.3e-09 I-set 1/5 328 418 .. 1 97 [] 114.2 2.4e-30 V-set 1/4 327 418 .. 1 130 [] 2.7 0.32 ig 2/5 507 575 .. 1 65 [] 40.8 3.1e-08 I-set 2/5 493 591 .. 1 97 [] 102.4 9e-27 V-set 2/4 495 591 .. 1 130 [] 13.0 0.03 Extensin_2 1/1 555 869 .. 1 385 [] -140.0 0.52 ig 3/5 1016 1078 .. 1 65 [] 29.7 6.6e-05 I-set 3/5 1002 1094 .. 1 97 [] 94.4 2.2e-24 V-set 3/4 1002 1094 .. 1 130 [] 8.1 0.094 ig 4/5 1143 1204 .. 1 65 [] 45.1 1.6e-09 I-set 4/5 1129 1220 .. 1 97 [] 120.0 4.6e-32 V-set 4/4 1129 1220 .. 1 130 [] 10.3 0.057 ig 5/5 1242 1304 .. 1 65 [] 7.0 11 I-set 5/5 1228 1320 .. 1 97 [] 68.8 1.2e-16 Alignments of top-scoring domains: ig: domain 1 of 5, from 342 to 402: score 45.4, E = 1.3e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++v L C v g p+++v+W+ +gk+l+++ ++++++ ++ ++ mKIAA4170 342 GSRVQLDCIV--VGIPPPQVRWYCEGKeLEnSPDIHIVQAGNLHS-- 384 tsLtitnvtpeDggtYtCvv<-* Lti ++ +eD+g Y+C + mKIAA4170 385 --LTIAEAFEEDTGRYSCFA 402 I-set: domain 1 of 5, from 328 to 418: score 114.2, E = 2.4e-30 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+Ftqk+++ eV eG+++ ++C V G P+P+V W+ G++l + mKIAA4170 328 PRFTQKLRSREVPEGSRVQLDCIVVGIPPPQVRWYCEGKELEN---- 370 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq s+ ++++ g + ++LtI +++ +D G Y+C A+N +G++++sae ++ mKIAA4170 371 SPDIHIVQAG--NLHSLTIAEAFEEDTGRYSCFASNIYGTDSTSAEIYIE 418 <-* mKIAA4170 - - V-set: domain 1 of 4, from 327 to 418: score 2.7, E = 0.32 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + tq r s v+eG +v L C + + mKIAA4170 327 PPRFTQ-KLR----------SREVPEGSRVQLDCIVV----GI---- 354 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn + +v Wy ++ ++ + mKIAA4170 355 PPPQVRWYC-EGK--------------------------ELENSPDIHIV 377 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* ++ sLtI + +D+G Y C ++ +++ ++ + ++ mKIAA4170 378 QAGNLHSLTIAEAFEEDTGRYSCFasniygtdSTSAEIYIE 418 ig: domain 2 of 5, from 507 to 575: score 40.8, E = 3.1e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v + C+v+ g p+++v W+r+g+ ++++ + ++ + + +s mKIAA4170 507 GQLVVFECRVK--GAPSPKVEWYREGTlIEdSPDFRILQKKPRSMAE 551 t....sLtitnvtpeDggtYtCvv<-* ++ +L+i +v +eD+g +tC++ mKIAA4170 552 PeeicTLVIAEVFSEDSGCFTCTA 575 I-set: domain 2 of 5, from 493 to 591: score 102.4, E = 9e-27 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+Ft+ ++++ ++eG+ ++feC+V+G P P+V+W++ G + mKIAA4170 493 PVFTKMLQNLSASEGQLVVFECRVKGAPSPKVEWYREGTLIED---- 535 sdrfkvtydg......GsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeas s+ f++ +++++ + ++tL+I +v+++DsG tC+A+N++G++++ mKIAA4170 536 SPDFRILQKKprsmaePEEICTLVIAEVFSEDSGCFTCTASNKYGTVSSI 585 aeLtVq<-* a+L V+ mKIAA4170 586 AQLDVR 591 V-set: domain 2 of 4, from 495 to 591: score 13.0, E = 0.03 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + q ++++eG+ v + C ++ + mKIAA4170 495 FTKMLQ--------------NLSASEGQLVVFECRVK----GA---- 519 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn + v Wyr + +i +s++++ + ++r mKIAA4170 520 PSPKVEWYR-EGT------LI-----EDSPDFRILQKKPRSMAEP----- 552 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* + ++L I + ++DsG+ +C +++ ++ + +L V+ mKIAA4170 553 --EEICTLVIAEVFSEDSGCFTCTasnkygtvSSIAQLDVR 591 Extensin_2: domain 1 of 1, from 555 to 869: score -140.0, E = 0.52 *->lltlvvalv....slslpseasakYsYsSPPPpekpYvYkSPPpPsp + tlv+a v +++s ++ as kY S + + s mKIAA4170 555 ICTLVIAEVfsedSGCFTCTASNKYGTVSSIAQLDV---RGNEDISD 598 kyvykSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSP + +S +p v + P P + P+p + PP+Pk mKIAA4170 599 NGALHSANSTTNPAVAEHQPSP---LN----PQPLSEEQPPKPKL----- 636 PpPvykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSP v + P + + +++ P + S + S mKIAA4170 637 -EGVLVNHNEPRSSSRIGLRVHFNLPEDDK--DMEASSGSGA---ANTSQ 680 PPPpyvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkkyiyksppp P +s P ++ + P P +P k pPp++ mKIAA4170 681 TRP----NSFP---ERFNGQEARIPEPSSP--IKEPPPVL---------- 711 pephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppkyV k++ S + + +v+ ++++ SP Pk+s + mKIAA4170 712 ---AKPKLDSTQLQQ--LHNQVLLEQQQLQNTSPSSPKESLH-----MSA 751 YkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPtyvYkSpPpPy +S+Pp v +S k++ P + +P+ mKIAA4170 752 LNSAPPAV---TISS----KQVKG--------------PAPQMFNLARPK 780 k..pptppkiyksPPPPtPvyvYkspPpippik.......sssppPvyvY + p P +Pv+ P i+++ ++++ +P mKIAA4170 781 HffPASSTSTATVSPSSSPVFTLSNTPQ--TIQrtvskesLLMAHPSTQG 828 kSpPppvysPPPPyvYssPPPPvyvynsaPvykksPPkhhYiYsSPP... +Sp + + + P PP P+ +PP Y+ S + + mKIAA4170 829 RSPGGLS-------IQNEPAPPS------PAEPAAPPTAAYSIPSGNqfq 865 Pphh<-* P+ mKIAA4170 866 PHCV 869 ig: domain 3 of 5, from 1016 to 1078: score 29.7, E = 6.6e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++vt+tC g p ++v+W+++gk++ + +++ +++gd+t + mKIAA4170 1016 GSPVTFTCKI--VGIPVPKVYWFKDGKqISkRNEHCKMRREGDGTCS 1060 tsLtitnvtpeDggtYtCvv<-* L+i ++ +D+g+Yt ++ mKIAA4170 1061 --LHIESTHGDDDGNYTIMA 1078 I-set: domain 3 of 5, from 1002 to 1094: score 94.4, E = 2.2e-24 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P F++++k V+eG++++f+Ck+ G P P+V WfKdG+++s + mKIAA4170 1002 PIFDKRLKHFRVTEGSPVTFTCKIVGIPVPKVYWFKDGKQISK---R 1045 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq +++k++ +g +gt++L I dD G Yt+ A N+ G+ ++s +L Vq mKIAA4170 1046 NEHCKMRREG-DGTCSLHIESTHGDDDGNYTIMAANPQGRISCSGHLMVQ 1094 <-* mKIAA4170 - - V-set: domain 3 of 4, from 1002 to 1094: score 8.1, E = 0.094 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss ++ + + +v eG vt++C+ + mKIAA4170 1002 PIFDKR--LK----------HFRVTEGSPVTFTCKIV----GI---- 1028 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn + vyW++ + ++ e +k r++ mKIAA4170 1029 PVPKVYWFK-DGK-------------------QISKRNEHCKMRRE---- 1054 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* ++g++sL+I + + +D G Y+ ++ ++ + +L+V mKIAA4170 1055 -GDGTCSLHIESTHGDDDGNYTIMaanpqgriSCSGHLMVQ 1094 ig: domain 4 of 5, from 1143 to 1204: score 45.1, E = 1.6e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +L C v +g p++++tWl ng+++ ++ +++ +++++ + mKIAA4170 1143 GRLCRLDCKV--SGLPPPELTWLLNGQpVLpDASHKMLVRETGVHS- 1186 tsLtitnvtpeDggtYtCvv<-* L i ++t+ D+gtYtCv+ mKIAA4170 1187 --LLIDPLTQRDAGTYTCVA 1204 I-set: domain 4 of 5, from 1129 to 1220: score 120.0, E = 4.6e-32 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+q p d+++ eG +r++CkV+G P+P+ +W+ +Gqp+ + mKIAA4170 1129 PHFLQAPGDMVAHEGRLCRLDCKVSGLPPPELTWLLNGQPVLP---- 1171 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq + +k+ +++ g ++L I+ + +D+G+YtCvAtN+ G+ + s eLtV mKIAA4170 1172 DASHKMLVRE-TGVHSLLIDPLTQRDAGTYTCVATNKTGQNSFSLELTVV 1220 <-* mKIAA4170 - - V-set: domain 4 of 4, from 1129 to 1220: score 10.3, E = 0.057 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + +++ p+ ++ eG +L C++s + + mKIAA4170 1129 PHFLQA--PG----------DMVAHEGRLCRLDCKVS---GLP---- 1156 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg + +++W ++qp + ++k vr mKIAA4170 1157 PP-ELTWLLNgQPV----------------------LPDASHKMLVR--- 1180 npskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* g sL I l++ D GtY+C+ +++++ + + +LtV+ mKIAA4170 1181 --ETGVHSLLIDPLTQRDAGTYTCVatnktgqnSFSLELTVV 1220 ig: domain 5 of 5, from 1242 to 1304: score 7.0, E = 11 *->GesvtLtCsvsgfgppdvtvtWlrngk.ltgvlvtssenngdstyqt G++v+L +v g p++ ++W++++ ++++++ ++s ++++ y mKIAA4170 1242 GHPVRLEGRV--IGMPPPVFYWKKDNEtIPFTRERISMHQDTTGYVC 1286 sLtitnvtpeDggtYtCvv<-* L i++++++D+g Yt + mKIAA4170 1287 -LLIQPAKKSDAGWYTLSA 1304 I-set: domain 5 of 5, from 1228 to 1320: score 68.8, E = 1.2e-16 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+++ k+++ V eG ++r+e +V+G P+P W+Kd++ ++ ++ mKIAA4170 1228 PVILEKLQNSGVPEGHPVRLEGRVIGMPPPVFYWKKDNETIPF--TR 1272 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq +r++++ d g L I+ ++++D+G Yt A+N+aG ++++a+L ++ mKIAA4170 1273 -ERISMHQDT-TGYVCLLIQPAKKSDAGWYTLSAKNEAGIVSCTARLDIY 1320 <-* mKIAA4170 - - //