hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg08918/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4169 ( 281 res) mbg08918 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- GTP_CDC Cell division protein 329.4 4.2e-95 1 MMR_HSR1 GTPase of unknown function -7.8 0.035 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- MMR_HSR1 1/1 28 179 .. 1 140 [] -7.8 0.035 GTP_CDC 1/1 35 272 .. 1 294 [] 329.4 4.2e-95 Alignments of top-scoring domains: MMR_HSR1: domain 1 of 1, from 28 to 179: score -7.8, E = 0.035 *->lrvai...vGrPNVGKSTLiNaLtgk...kraiVsdyPGtTrdpneg + v +++ +G + GKSTL+N+L +++ +++a ++ +++ mKIAA4169 28 FSVSLshaAGQSGLGKSTLVNTLFKSqvsRKASSWNRE----EKIPK 70 rvel...........dgrqiilvDTPGiiegaskgeg............. +ve++ ++ ++++ +++++DTPG+ g+ + ++ ++ ++ +++ mKIAA4169 71 TVEIkaighvieeggVKMKLTVIDTPGF--GDQINNEncwepiekyineq 118 .........elgertleaieeaDlilfVvDase.gltedytieeDleiad ++ +++ + ++ + +++++l+ + + + l + Dle+ + mKIAA4169 119 yekflkeevNIARKKRIPDTRVHCCLYFISPTGhSLR-----PLDLEFMK 163 llydeerernleltLqelekkgkPvilvlNKiD<-* l + + +i v+ K+D mKIAA4169 164 HL---------------SKVVN--IIPVIAKAD 179 GTP_CDC: domain 1 of 1, from 35 to 272: score 329.4, E = 4.2e-95 *->kGfdFTLMVVGeSGLGKtTlINTLFltdLidangvanDsreidgpae +G+SGLGK+Tl+NTLF +++ + + ++e mKIAA4169 35 --------AAGQSGLGKSTLVNTLFKSQVSRK-------ASSWNREE 66 tkikkTveIkeitkveiEEdGvkLnLTViDTPGFGDaiDNskcWepIveY ki kTveIk + ++iEE Gvk +LTViDTPGFGD+i+N++cWepI +Y mKIAA4169 67 -KIPKTVEIK-AIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKY 114 IdeQheqYLrqEsrinRetkivDnRVHcCLYFIsPtGhgLkpLDvefMKk I+eQ+e +L +E +i R ++i D+RVHcCLYFIsPtGh L+pLD+efMK+ mKIAA4169 115 INEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKH 164 LsekVNlIPVIAKADtLTadElqefKkrIreeierqnIkIYkFPPdeeed Ls+ VN+IPVIAKADt+T++E efK+r+r e+e +I+ Y+ e d mKIAA4169 165 LSKVVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP---QKEFD 211 eGDEefkeqtqqLk.ssiPFAIVGSneeiengdGekVRGRkYPWGvVEVE e D e k+ + +++++s+PFA+VGS++e++ +G++V GRk+PWG++E mKIAA4169 212 E-DLEDKTENDKIRqESMPFAVVGSDKEYQV-NGKRVLGRKTPWGIIE-G 258 NpsHCDFvkLRnlLirtHLqDLketTeeilYEnYRsekLsalglkaen<- Np H L +++++ +n mKIAA4169 259 NPAH----------------------------------LPEGQAARRN 272 * mKIAA4169 - - //