hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj49300/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4168  ( 887 res)   mfj49300

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CHGN     Chondroitin N-acetylgalactosaminyltransferas   763.4   8.9e-226   1
Fringe   Fringe-like                                    -92.1       0.15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Fringe     1/1     168   417 ..     1   253 []   -92.1     0.15
CHGN       1/1     333   869 ..     1   683 []   763.4 8.9e-226

Alignments of top-scoring domains:
Fringe: domain 1 of 1, from 168 to 417: score -92.1, E = 0.15
                   *->evlelkD.vFIAVKTTrkyHktRLeLLlqTWisrareqTFiFT..Dg
                      +   + D +++ V T +ky + R     +TW    +    +F ++ +
   mKIAA4168   168    PTSGPGDfLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSsqQS 214  

                   eDkelqe....kagghlinTnCSavhtrqALcCKMavEy..DkFleSgkK
                   +  +l ++++++  + l     S    ++     M + y +D +l     
   mKIAA4168   215 PSAALGQppppLPVIALPGVDDSYPPQKKSF---MMIKYmhDHYLD-KYE 260  

                   WFCHvDDDNYVNlraLlkLLsafshsqDvYlGrPSLdhPieatervkedg
                   WF   DDD Y+   +L + L++  +s+ +YlG+  L    e      e g
   mKIAA4168   261 WFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNTEELGKLGLEPG 310  

                   tnksvkFWFATGGAGFCisRgLALKMsPwASgG.kFistaervRLPDDcT
                           F  GG G   sR    +M P  +   + + t        D+ 
   mKIAA4168   311 E------NFCMGGPGMIFSREVLRRMVPHIGEClREMYTTH-----EDVE 349  

                   iGYIiEglLgvkLlhs....plFHSHLEn.....LqrlrteslleQVtLS
                   +G  +    g +   s + ++lFH   E+++++ +q l   +++  +tL 
   mKIAA4168   350 VGRCVRRFGGTQCVWSyemqQLFHENYEHnrkgyIQDLHNSKIHAAITL- 398  

                   YGgpenkrNVvkvkGpFsleeDPtR<-*
                        nkr + +       +   +R   
   mKIAA4168   399 ---HPNKRPAYQYRL---HNYMLSR    417  

CHGN: domain 1 of 1, from 333 to 869: score 763.4, E = 8.9e-226
                   *->hlekClrdmltadeDvlelGRCvrdatGvgClgthegvqyyemqsle
                      h++ Clr+m+t++eDv e+GRCvr++ G       ++v++yemq+l+
   mKIAA4168   333    HIGECLREMYTTHEDV-EVGRCVRRFGGT------QCVWSYEMQQLF 372  

                   lsnseaekesyierlkspafksAltvhPvknpadmyrLHkyflrlelera
                   ++n+e ++++yi +l++++++ A+t+hP+k pa++yrLH+y+l+++++++
   mKIAA4168   373 HENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHNYMLSRKISEL 422  

                   reeiiqLeaeisrlaeysasegirkisWplgiPpSFmpstPnnRyevltW
                   r ++iqL++e+ ++++ s+se   k++ +lg  pSF  ++P+ R+ev +W
   mKIAA4168   423 RYRTIQLHRESALMSKLSNSE-VSKEDQQLGRTPSFNHFQPRERNEVMEW 471  

                   eyfTgthlfscaDgLakePretldgaeRaDlaDvveqaLeelNrnasprl
                   e++Tg+ l+s+a +  ++Pr+   ++ R +l+D+v q++e++N na+ r+
   mKIAA4168   472 EFLTGKLLYSAAEN--QPPRQSINSILRSALDDTVLQVMEMINENAKSRG 519  

                   RvKGAGSAAAYASDViKLqfqsLqnGYRRfdPtrGmdYtLDLlLRKTVNE
                   R                ++f+++q+GYRR+dP+ G++Y+LDLlL      
   mKIAA4168   520 RL---------------IDFKEIQYGYRRVDPMHGVEYILDLLL------ 548  

                   mPEVDNRFESdleaahpegkrrilvrRrayVlrplsrvqivEHEELDAqp
                              l++ h++ k +++vrR+ay+++p+s+  + E EELD + 
   mKIAA4168   549 -----------LYKRHKGRKLTVPVRRHAYLQQPFSKPFFREVEELDVNR 587  

                   spyvteatasGaLSFLSNSLKKLVPFqLPGSKsehkePKDKrihvllPLA
                   ++ ++++    + S +SNSLK L   q       h    +K++h+l+PL 
   mKIAA4168   588 LVESINSG-TQSFSVISNSLKILSSLQEAKDIGGHN---EKKVHILVPL- 632  

                   legrvdsalrFleafaklCLFepneDravlLlvllYgleeerkvreDpFk
                    +gr d++lrF+e+f+++CL +p +  +v+L++ l++ + +++       
   mKIAA4168   633 -VGRYDIFLRFMENFESTCL-IPKQ--NVKLVIILFSRDAGQESI----- 673  

                   avKaeaaELerDYRykslpgariawlsVsPALseefsrpvDPqSWLLHAS
                       + +EL  +Y +  +p a++   +      +efsr++          
   mKIAA4168   674 ----KHIELIQEYQSR-YPSAEMMLIPMK----GEFSRGL---------- 704  

                   mYGPRqLLaLrlgdealpkhgldtLlfLadVdmvfttdFLnRcRmNTIlG
                            L+ +++++++   dtLl+++dVd+ f  dFL+RcR NT++G
   mKIAA4168   705 --------GLEMASSQFDN---DTLLLFCDVDLIFRGDFLQRCRDNTVQG 743  

                   wQvYFPvvFseYnPaivymEmTEKEEketPteqareaALSelqsgvdPse
                   +QvY+P++Fs+Y+P++ +                           ++P e
   mKIAA4168   744 QQVYYPIIFSQYDPKVTH-------------------------MRNPPTE 768  

                   gdtlvvsrdtGrFdrqgygetcfYksDyvaARarLaqqeVgGfdEeeIeG
                   g  +v+s++tG+++++gyg+tc+YksD++           gGfd ++I+G
   mKIAA4168   769 G-DFVFSKETGFWRDYGYGITCIYKSDLLG---------AGGFD-TSIQG 807  

                   WGlEdvDLfekflrfGEETRPPGVESiLDmFVAAqsslhvlRavEPgLvF
                   WGlEdvDL++k++ +G                     l+ +R++E+g+v 
   mKIAA4168   808 WGLEDVDLYNKVILSG---------------------LRPFRSQEVGVV- 835  

                   GhryhprlCdpnsLdteqyhrClrSkaenlASrdQL<-*
                    h++hp++Cdpn Ld++qy++Cl+Ska++ AS+ QL   
   mKIAA4168   836 -HIFHPVHCDPN-LDPKQYKMCLGSKASTFASTMQL    869  

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