hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj04828/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4167  ( 342 res)   mpj04828

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   293.2    1.9e-83   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7      42    81 ..     1    46 []    38.3    1e-06
WD40       2/7      84   123 ..     1    46 []    53.8  2.3e-11
WD40       3/7     126   165 ..     1    46 []    55.2  8.4e-12
WD40       4/7     168   207 ..     1    46 []    55.1  8.9e-12
WD40       5/7     210   250 ..     1    46 []    40.6  2.1e-07
WD40       6/7     253   295 ..     1    46 []    35.1  9.5e-06
WD40       7/7     298   339 ..     1    46 []    30.9  0.00017

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 42 to 81: score 38.3, E = 1e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  l  tl gH++  +++sv+fsp+g      ++las+  D  i +W
   mKIAA4167    42    NyALRLTLAGHSA--AISSVKFSPNG------EWLASSAaDALIIIW 80   

                   d<-*
                       
   mKIAA4167    81 G    81   

WD40: domain 2 of 7, from 84 to 123: score 53.8, E = 2.3e-11
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++ +tl gH+   ++++va+s+d+      ++l+s+s+D+t+++W
   mKIAA4167    84    DgNCKKTLYGHSL--EISDVAWSSDS------SRLVSASdDKTLKVW 122  

                   d<-*
                   d   
   mKIAA4167   123 D    123  

WD40: domain 3 of 7, from 126 to 165: score 55.2, E = 8.4e-12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+l+tlkgH++   V +++f+p +      nl++sgs D ++++W
   mKIAA4167   126    SgKCLKTLKGHSD--FVFCCDFNPPS------NLIVSGSfDESVKIW 164  

                   d<-*
                   +   
   mKIAA4167   165 E    165  

WD40: domain 4 of 7, from 168 to 207: score 55.1, E = 8.9e-12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+k+l+tl++H++  p+++v f+ +g      +l++sgs Dg +r+W
   mKIAA4167   168    TgKCLKTLSAHSD--PISAVNFNCNG------SLIVSGSyDGLCRIW 206  

                   d<-*
                   d   
   mKIAA4167   207 D    207  

WD40: domain 5 of 7, from 210 to 250: score 40.6, E = 2.1e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++lrtl   +g+ pV+ v+fsp+g      ++++++  D+t++lW
   mKIAA4167   210    SgQCLRTLA-DEGNPPVSFVKFSPNG------KYILTATlDNTLKLW 249  

                   d<-*
                   d   
   mKIAA4167   250 D    250  

WD40: domain 6 of 7, from 253 to 295: score 35.1, E = 9.5e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++l+t++gH++e++++  +fs +g      ++++sgs+D+ +++W
   mKIAA4167   253    RgRCLKTYTGHKNEKYCLFASFSVTG-----RKWVVSGSeDNMVYIW 294  

                   d<-*
                   +   
   mKIAA4167   295 N    295  

WD40: domain 7 of 7, from 298 to 339: score 30.9, E = 0.00017
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs...Dgtir
                      t++ ++ l+gHt+   V s a +p+       n++as+  ++D+ti+
   mKIAA4167   298    TkEIVQRLQGHTD--VVISAACHPTK------NIIASAAlenDKTIK 336  

                   lWd<-*
                   +W+   
   mKIAA4167   337 VWS    339  

//