hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj04828/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4167  ( 342 res)   mpj04828

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       262.6    5.4e-75   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7      44    81 ..     1    38 []    36.3  6.8e-07
WD40       2/7      86   123 ..     1    38 []    52.0  1.4e-11
WD40       3/7     128   165 ..     1    38 []    54.3  2.6e-12
WD40       4/7     170   207 ..     1    38 []    50.9  2.9e-11
WD40       5/7     212   250 ..     1    38 []    35.4  1.3e-06
WD40       6/7     255   295 ..     1    38 []    30.0  5.6e-05
WD40       7/7     300   339 ..     1    38 []    19.3    0.091

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 44 to 81: score 36.3, E = 6.8e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       +  +l gH++++++v+fsp+ g++las+ +D  i iW    
   mKIAA4167    44    ALRLTLaGHSAAISSVKFSPN-GEWLASSAADALIIIWG    81   

WD40: domain 2 of 7, from 86 to 123: score 52.0, E = 1.4e-11
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +c+++l+gH+  +++va+s d +++l+s+S+D+t+k+Wd   
   mKIAA4167    86    NCKKTLyGHSLEISDVAWSSD-SSRLVSASDDKTLKVWD    123  

WD40: domain 3 of 7, from 128 to 165: score 54.3, E = 2.6e-12
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +cl++l+gH+++V c++f+p+ ++l++sgS D ++kiW+   
   mKIAA4167   128    KCLKTLkGHSDFVFCCDFNPP-SNLIVSGSFDESVKIWE    165  

WD40: domain 4 of 7, from 170 to 207: score 50.9, E = 2.9e-11
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +cl++l++H++p+++v f+ + g+l++sgS Dg ++iWd   
   mKIAA4167   170    KCLKTLsAHSDPISAVNFNCN-GSLIVSGSYDGLCRIWD    207  

WD40: domain 5 of 7, from 212 to 250: score 35.4, E = 1.3e-06
                   *->eclavl..gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +cl++l +  + pV+ v+fsp+ g++++++  D+t+k+Wd   
   mKIAA4167   212    QCLRTLadEGNPPVSFVKFSPN-GKYILTATLDNTLKLWD    250  

WD40: domain 6 of 7, from 255 to 295: score 30.0, E = 5.6e-05
                   *->eclavl.gHtspVtcvafspd..sgpllasgSrDgtikiWd<-*
                       cl++++gH++  +c+  s + +++++++sgS+D+ ++iW+   
   mKIAA4167   255    RCLKTYtGHKNEKYCLFASFSvtGRKWVVSGSEDNMVYIWN    295  

WD40: domain 7 of 7, from 300 to 339: score 19.3, E = 0.091
                   *->eclavl.gHtspVtcvafspd.sgpllasgSrDgtikiWd<-*
                      e ++ l+gHt+ V + a++p ++    a    D+tik+W+   
   mKIAA4167   300    EIVQRLqGHTDVVISAACHPTkNIIASAALENDKTIKVWS    339  

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