hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj42151/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4165 ( 674 res) mfj42151 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pkinase Protein kinase domain 303.4 2.7e-87 1 PB1 PB1 domain 95.7 9.2e-25 1 C1_1 Phorbol esters/diacylglycerol binding dom 80.9 2.5e-20 1 Pkinase_C Protein kinase C terminal domain 53.1 6.1e-12 1 Pkinase_Tyr Protein tyrosine kinase 51.6 4.4e-15 1 C1_3 C1-like domain 12.6 0.11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PB1 1/1 104 187 .. 1 89 [] 95.7 9.2e-25 C1_3 1/1 231 262 .. 1 30 [] 12.6 0.11 C1_1 1/1 220 272 .. 1 55 [] 80.9 2.5e-20 Pkinase 1/1 332 600 .. 1 287 [] 303.4 2.7e-87 Pkinase_Tyr 1/1 332 600 .. 1 272 [] 51.6 4.4e-15 Pkinase_C 1/1 620 666 .. 1 47 [] 53.1 6.1e-12 Alignments of top-scoring domains: PB1: domain 1 of 1, from 104 to 187: score 95.7, E = 9.2e-25 *->tvdvKlrYgggirrtfilsvsrdisfeeLrskvakrfgld..vtfkl +v+vK++Y+g+i++ +++++isfe L+s+v++++ +d++++f+ mKIAA4165 104 QVRVKAYYRGDIMI---THFEPSISFEGLCSEVRDMCSFDneQPFTM 147 kYpDeDgDdlVsissDeDLeeaieeyrsllsesk.ktLrlfvfpa<-* k++De+g d++++ss+ +Leea+++y+ + k+++L ++vfp mKIAA4165 148 KWIDEEG-DPCTVSSQLELEEAFRLYELN----KdSELLIHVFPC 187 C1_3: domain 1 of 1, from 231 to 262: score 12.6, E = 0.11 *->ktCdaCglpidg..dpfYsCseCdFvlHeeCa<-* +C +C i g ++ +Y+C C +H++C mKIAA4165 231 AHCAICTDRIWGlgRQGYKCINCKLLVHKKCH 262 C1_1: domain 1 of 1, from 220 to 272: score 80.9, E = 2.5e-20 *->HhFvhrwnfkqptfCdhCgellwgslgkqGlkCswCklnvHkrChek H F+++ +f++ ++C+ C +++wg lg+qG+kC +Ckl+vHk+Ch++ mKIAA4165 220 HTFQAK-RFNRRAHCAICTDRIWG-LGRQGYKCINCKLLVHKKCHKL 264 VppeCgcg<-* V++eCg + mKIAA4165 265 VTIECGRH 272 Pkinase: domain 1 of 1, from 332 to 600: score 303.4, E = 2.7e-87 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr + ll+++G+Gs+++V + + k+t +i+A+K++kk+ ++++d+ + mKIAA4165 332 FDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQ 378 rsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrlldLfdyls + E ++ ++Hp+ v l+ +f+++++l +V Ey++gG dL+ +++ mKIAA4165 379 T-EKHVFEQAsNHPFLVGLHSCFQTESRLFFVIEYVNGG----DLMFHMQ 423 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldeng r+++l +e++a+++ +i +l+YLH++gii+RDLK++N+Lld++g mKIAA4165 424 ---RQRKL--PEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEG 468 vvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkv ++ K++D G +k ++++ +++tf+GTp+Y+APE+l+ g++yg +v mKIAA4165 469 HI----KLTDYGMCKEG-LrPGDtTSTFCGTPNYIAPEILR-GEDYGFSV 512 DvWSlGvilyelltGkpPFsgev..q.ds.ldqlqlirkilgpplefdsp D+W+lGv+++e++ G+ PF+ +++++++++++++l++ il+++ ++++ mKIAA4165 513 DWWALGVLMFEMMAGRSPFDIVGssDnPDqNTEDYLFQVILEKQIRIPRS 562 ewdsisrsefrrlpnlseeakdLikkcLnkDPskRlt......aeeilqH + a +++k+ LnkDP++Rl+ ++++++++i H mKIAA4165 563 LS---------------VKAASVLKSFLNKDPKERLGchpqtgFADIQGH 597 Pwf<-* P+f mKIAA4165 598 PFF 600 Pkinase_Tyr: domain 1 of 1, from 332 to 600: score 51.6, E = 4.4e-15 *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtL.keigasseei + l++++G+G++ +V + +lk +t+ A K+++ke ++e mKIAA4165 332 FDLLRVIGRGSYAKVLLVRLK----KTDRIYAMKVVkKE-LVNDDE- 372 eredFlr.EAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegG d ++E + + +Hp +V L+ + + l+ V Ey+ gG mKIAA4165 373 -DIDWVQtEKHVFEQASNHPFLVGLHSCFQT-ESR----LFFVIEYVNGG 416 dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcL dL ++++ +r+L+ ++ ++++i+ +++YL++++++ RDL N+L mKIAA4165 417 DLMFHMQR---QRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVL 463 VsenlvVKIsDFGLaRdiynddyYvrkkgggklPv....kWmAPEslkyg +++++++K +D G+++ g++ +++ APE l+ mKIAA4165 464 LDSEGHIKLTDYGMCKEG-------LRPGDTTSTFcgtpNYIAPEILRGE 506 kFtskSDVWSFGVlLWEiftlGeqPFYpgmsnee.........vlellye + D W+ GVl++E++ G++P + + ++++++++++ +++ + e mKIAA4165 507 DYGFSVDWWALGVLMFEMMA-GRSP-FDIVGSSDnpdqntedyLFQVILE 554 dGyRLprPenCPdelYdlMlqCWaedPedRP......tFsel..verL<- + R pr + + ++ ++ ++dP++R + ++++ F++++++ ++ mKIAA4165 555 KQIRIPRSL--SVKAASVLKSFLNKDPKERLgchpqtGFADIqgHPFF 600 * mKIAA4165 - - Pkinase_C: domain 1 of 1, from 620 to 666: score 53.1, E = 6.1e-12 *->kvksptDTsNFDpeFTsepptltpppdsr.lssgkqleFvGFtYvnp +++++ NFD FT+ep++ltp +d++ ++++q+eF+GF Y np mKIAA4165 620 NISGEFGLDNFDSQFTNEPVQLTP-DDDDiVRKIDQSEFEGFEYINP 665 e<-* mKIAA4165 666 L 666 //