hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mib/mib02090/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4164 ( 1207 res) mib02090 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FN3 Fibronectin type 3 domain 354.2 8.1e-102 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FN3 1/9 279 368 .. 1 69 [] 41.1 1.5e-07 FN3 2/9 382 463 .. 1 69 [] 40.7 1.9e-07 FN3 3/9 478 560 .. 1 69 [] 42.1 7.4e-08 FN3 4/9 575 659 .. 1 69 [] 48.3 1e-09 FN3 5/9 674 755 .. 1 69 [] 49.3 5e-10 FN3 6/9 770 849 .. 1 69 [] 32.8 4.6e-05 FN3 7/9 872 947 .. 1 69 [] 33.4 3e-05 FN3 8/9 961 1042 .. 1 69 [] 36.0 5.3e-06 FN3 9/9 1057 1137 .. 1 69 [] 30.3 0.00027 Alignments of top-scoring domains: FN3: domain 1 of 9, from 279 to 368: score 41.1, E = 1.5e-07 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.............. + + ++v+++ ++ v+lsW pP + + +++++ + + mKIAA4164 279 LSGIEK---PQVSNIQAR------AVVLSWAPPvglscgphgglsfp 316 ................ivgYr.....ytltgLkPgaepwteYefrVrAvn ++++ ++++ ++++ + Y++++ ++ l++L+P t Y++rV+Av+ mKIAA4164 317 ysyevalsdkgrdgkyKIIYSgeeleCNLKDLRPA----TDYHVRVYAVY 362 gndaGeg<-* n++ + mKIAA4164 363 -NSVKGS 368 FN3: domain 2 of 9, from 382 to 463: score 40.7, E = 1.9e-07 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... P P +++ + +++ s+tl+W++P +++++i++Y ++ mKIAA4164 382 PECPFP---PKLAHRSKS------SLTLQWKAPidngskITSYLlew 419 ...................ytltgLkPgaepwteYefrVrAvngndaGeg ++++++++ ++ ++++ ++lt L P Y+fr++A+n+ G + mKIAA4164 420 degkrnsgfrqcffgsqkhCKLTKLCPA----MGYTFRLAARND--IGTS 463 <-* mKIAA4164 - - FN3: domain 3 of 9, from 478 to 560: score 42.1, E = 7.4e-08 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. P P +r++ + t +tl+W++P++ +++++++Y+ + mKIAA4164 478 PQMPLA---PRLVRAGVT------WITLQWSRPegcspeeVITYTld 515 ....................ytltgLkPgaepwteYefrVrAvngndaGe +++++++ ++ ++++ ++t+++Lk t+Y+fr++A n G mKIAA4164 516 iqedendshfhpkytgedltCTVKNLKRS----TQYKFRLTASNM--EGK 559 g<-* + mKIAA4164 560 S 560 FN3: domain 4 of 9, from 575 to 659: score 48.3, E = 1e-09 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. PgpP++p l +vts+ ++++W++P+++++++i+ Y + mKIAA4164 575 PGPPTRP--LIKGPVTSH------GFSVKWDAPkdnggseILKYLle 613 .....................ytltgLkPgaepwteYefrVrAvngndaG ++++++ +++++ +++ ++y++t+LkPg t Y+ r +++ +G mKIAA4164 614 itdgtseagqwevaysgsateYVFTHLKPG----TLYKLRACCIST--GG 657 eg<-* + mKIAA4164 658 HS 659 FN3: domain 5 of 9, from 674 to 755: score 49.3, E = 5e-10 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. Pg + +rv ++ v+l+W+ P ++++ ++ +Y+++ mKIAA4164 674 PGQCRP---PRVLGRPKHK-----GVHLEWDVPasesgceVSEYSve 712 ..................ytltgLkPgaepwteYefrVrAvngndaGeg< ++++++ +++ +++ ++t+ +L Pg t Y+frVrA n+ +G+g mKIAA4164 713 mtepenvasevyhgpeleCTVGNLLPG----TVYRFRVRALND--GGYG 755 -* mKIAA4164 - - FN3: domain 6 of 9, from 770 to 849: score 32.8, E = 4.6e-05 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... Pg + +rv+ + + v + We P +++ +i +Yr ++ mKIAA4164 770 PGQCRA---PRVSFTPDG------CVLVGWESPaspgadISEYRlew 807 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++ + + ++++ + ++L P +Y r++A+n aG g mKIAA4164 808 gedeqslelvyhgpdtcFEMRDLLPA----AQYCCRLQAFNP--AGAG 849 * mKIAA4164 - - FN3: domain 7 of 9, from 872 to 947: score 33.4, E = 3e-05 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... + +++++ +++ + ++l We+P +++++i+ Y + mKIAA4164 872 VLEEEP---PSAHPDSPS-----VCLVLNWEEPcnngseILAYNidl 910 ............ytltgLkPgaepwteYefrVrAvngndaGeg<-* +++ +++++++++ ++L P t+Y++r++A+n+ G g mKIAA4164 911 gdscitvgntttHVMKNLLPE----TTYRIRIQAINE--IGVG 947 FN3: domain 8 of 9, from 961 to 1042: score 36.0, E = 5.3e-06 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.............. P++P++ l+ + ++ s+ l+W +++ + ++ + mKIAA4164 961 PPSPPR---LECAASGPQ------SLKLKWGDSnskthaagdmvytl 998 .........ivgYr.....ytltgLkPgaepwteYefrVrAvngndaGeg ++ ++ i Yr+++ +y++ L++ t Y+fr++A ++ aGeg mKIAA4164 999 qledrnkrfISIYRgpshtYKVQRLTEF----TCYSFRIQAMSE--AGEG 1042 <-* mKIAA4164 - - FN3: domain 9 of 9, from 1057 to 1137: score 30.3, E = 0.00027 *->PgpPsnptelrvtdvtststsdltsvtlsWe..pP....ivgYr... P+ + +rvt + s+++ We+ pP ++ v+Y+ ++ mKIAA4164 1057 PPTLKA---PRVTQLEGN------SCEIFWEtvPPmrgdPVSYVlqv 1094 ..................ytltgLkPgaepwteYefrVrAvngndaGeg< ++++++ +++ ++++ ++ ++gL+ + t Y+frV A + mKIAA4164 1095 lvgrdseykqvykgeeatFQISGLQSN----TDYRFRVCACRR--CVDT 1137 -* mKIAA4164 - - //