hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mib/mib02090/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4164  ( 1207 res)   mib02090

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
fn3      Fibronectin type III domain                    308.3    9.3e-89   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
fn3        1/9     279   367 ..     1    84 []    33.2  6.1e-06
fn3        2/9     382   466 ..     1    84 []    42.6  8.7e-09
fn3        3/9     481   563 ..     1    84 []    32.7  8.2e-06
fn3        4/9     575   662 ..     1    84 []    47.7  2.6e-10
fn3        5/9     674   758 ..     1    84 []    42.0  1.3e-08
fn3        6/9     770   852 ..     1    84 []    29.8  6.5e-05
fn3        7/9     864   950 ..     1    84 []    30.1    5e-05
fn3        8/9     961  1045 ..     1    84 []    27.4  0.00034
fn3        9/9    1057  1137 ..     1    84 []    22.7   0.0087

Alignments of top-scoring domains:
fn3: domain 1 of 9, from 279 to 367: score 33.2, E = 6.1e-06
                   *->PsaPtnltvtdvtstsltlsWsppt........gngpitgYevtyRq
                      +s  + ++v+++++  ++lsW pp + + ++++g +   +Yev + +
   mKIAA4164   279    LSGIEKPQVSNIQARAVVLSWAPPVglscgphgGLSFPYSYEVAL-S 324  

                   pknggewneltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
                   +k+  ++  ++ +g + +++l++L+P t+Y+vrV+Av +         
   mKIAA4164   325 DKGRDGKYKIIYSGEELECNLKDLRPATDYHVRVYAVYNS--VKG    367  

fn3: domain 2 of 9, from 382 to 466: score 42.6, E = 8.7e-09
                   *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpknggew
                      P  P  ++   ++ +sltl+W++p +++++it+Y +++  +   ++ 
   mKIAA4164   382    PECPFPPKLAHRSKSSLTLQWKAPIdNGSKITSYLLEW-DEGKRNSG 427  

                   neltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                   +++   g++ ++ lt L P + Y++r++A+n++G++++S   
   mKIAA4164   428 FRQCFFGSQKHCKLTKLCPAMGYTFRLAARNDIGtSGYS    466  

fn3: domain 3 of 9, from 481 to 563: score 32.7, E = 8.2e-06
                   *->PsaPtnltvtdvtstsltlsWsppt..gngpitgYevtyRqpkngge
                      P aP+ +++     t +tl+Ws+p++    ++  Y+++  q++ +++
   mKIAA4164   481    PLAPRLVRAGV---TWITLQWSRPEgcSPEEVITYTLDI-QED-END 522  

                   ..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                   ++ + +    +  ++t+++Lk  t+Y++r++A n +G++ +S   
   mKIAA4164   523 shFHPKYTGEDL-TCTVKNLKRSTQYKFRLTASNMEGkSCPS    563  

fn3: domain 4 of 9, from 575 to 662: score 47.7, E = 2.6e-10
                   *->PsaPtnltvtdv.tstsltlsWsppt..gngpitgYevtyRqpkngg
                      P++Pt++ +++  ts  +++ W++p+++g+++i +Y ++   +  ++
   mKIAA4164   575    PGPPTRPLIKGPvTSHGFSVKWDAPKdnGGSEILKYLLEI-TDGTSE 620  

                   e.wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                    +  e+  +g++t+y++t LkPgt Y++r   +++gG+++ S   
   mKIAA4164   621 AgQWEVAYSGSATEYVFTHLKPGTLYKLRACCISTGGhSQCS    662  

fn3: domain 5 of 9, from 674 to 758: score 42.0, E = 1.3e-08
                   *->PsaPtnltvtdv.tstsltlsWsppt..gngpitgYevtyRqpkngg
                      P++ + ++v +++    ++l+W+ p ++ + +++ Y+v+   +  + 
   mKIAA4164   674    PGQCRPPRVLGRpKHKGVHLEWDVPAseSGCEVSEYSVEM-TEPENV 719  

                   ewneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                      +    g++ ++t+ +L Pgt Y +rV+A+n+gG Gp+S   
   mKIAA4164   720 --ASEVYHGPELECTVGNLLPGTVYRFRVRALNDGGyGPYS    758  

fn3: domain 6 of 9, from 770 to 852: score 29.8, E = 6.5e-05
                   *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpknggew
                      P++ + ++v+ + +  + + W+ p +++++i+ Y++++  ++    +
   mKIAA4164   770    PGQCRAPRVSFTPDGCVLVGWESPAsPGADISEYRLEW-GEDEQSLE 815  

                   neltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                     +  p t   ++ ++L P  +Y  r+qA n +G Gp+S   
   mKIAA4164   816 LVYHGPDTC--FEMRDLLPAAQYCCRLQAFNPAGaGPYS    852  

fn3: domain 7 of 9, from 864 to 950: score 30.1, E = 5e-05
                   *->PsaPtnltvtdvtsts.........ltlsWsppt.gngpitgYevty
                      P++++ l v +  + s ++++++  l+l+W+ p +++++i  Y++++
   mKIAA4164   864    PDPVSTLCVLEEEPPSahpdspsvcLVLNWEEPCnNGSEILAYNIDL 910  

                   RqpknggewneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-
                       ++      +  g+tt+++ ++L P t+Y +r+qA+n++G Gp+S  
   mKIAA4164   911 ----GDS----CITVGNTTTHVMKNLLPETTYRIRIQAINEIGvGPFS   950  

                   *
                    
   mKIAA4164     -   -    

fn3: domain 8 of 9, from 961 to 1045: score 27.4, E = 0.00034
                   *->PsaPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkngg
                      P++P +l + + ++ sl l W  + ++++ +    Y++++    + +
   mKIAA4164   961    PPSPPRLECAASGPQSLKLKWGDSNsktHAAGDMVYTLQLE---DRN 1004 

                   e..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                   ++    ++ p++t  y ++ L++ t Y++r+qA +++G+Gp+S   
   mKIAA4164  1005 KrfISIYRGPSHT--YKVQRLTEFTCYSFRIQAMSEAGeGPYS    1045 

fn3: domain 9 of 9, from 1057 to 1137: score 22.7, E = 0.0087
                   *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge.
                      P+  + ++vt +  +s  + W+  ++ +g+  +Y +++    ++ e 
   mKIAA4164  1057    PPTLKAPRVTQLEGNSCEIFWETVPpMRGDPVSYVLQV-LVGRDSEy 1102 

                   wneltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
                   ++ +     t  ++++gL+ +t+Y +rV A  +     +   
   mKIAA4164  1103 KQVYKGEEAT--FQISGLQSNTDYRFRVCACRRC--VDT    1137 

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