hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04507/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4162  ( 990 res)   mbg04507

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GKAP     Guanylate-kinase-associated protein (GKAP) p   967.9   2.5e-287   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GKAP       1/1     651   990 .]     1   365 []   967.9 2.5e-287

Alignments of top-scoring domains:
GKAP: domain 1 of 1, from 651 to 990: score 967.9, E = 2.5e-287
                   *->EdrskavkkkklsSIGiQVddieesdkkeEsksaskFqSiGVQVEed
                      Edr+k++kk++++SIGiQVdd+ee +k++Esk++ kFqS+GVQVEe+
   mKIAA4162   651    EDRKKDFKKNRCLSIGIQVDDAEEPEKMAESKTSNKFQSVGVQVEEE 697  

                   kRsarFkRSnSvtaavqADldleDaadsslkstEDksLqpgrtarrqsse
                   k+++rF+RSnSvt+avqADld++D++++sl+s+ED+s+ pg++ar++s++
   mKIAA4162   698 KCFRRFTRSNSVTTAVQADLDFHDNLENSLESIEDNSC-PGPMARQFSRD 746  

                   adaGPRAstvsvfktaqikralAydddyDldYEPPAldaSslPPPdPAPG
                   a++    stvs+++++++++a+A+ddd+D+d     +d+S+lPPPdP   
   mKIAA4162   747 AST----STVSIQGSGNHYHACAADDDFDTD-----FDPSILPPPDP--- 784  

                   PGSGRRDSWmesssespaeaaqrSaCrRDGeWFLKLLqAEverLEGWCkQ
                           W++s++e+p+ea+qrS+C+RDG+WFLKLLqAE++r+EGWCk 
   mKIAA4162   785 --------WIDSITEDPLEAVQRSVCHRDGHWFLKLLQAERDRMEGWCKL 826  

                   MerEakennLpEeiLgKirsAVGSAQLLmSQKfqQFreLCeqnLnPdAfP
                   MerE++ennLpE+iLgKir+AVGSAQLLm+QKf+QFreLCe+nLnP+A+P
   mKIAA4162   827 MEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAHP 876  

                   rPTaQDLAGFWDLLQLSIEdismKFdELyqLKANsWklletPlKdKeEkk
                   rPT+QDLAGFWD+LQLSIE+ismKFdEL+qLKAN+Wk+++ Pl dK+E++
   mKIAA4162   877 RPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMD-PL-DKKERR 924  

                   aPPPVPKKPAkgkAalvrerSldavdkQRQEARKRLLAAKRAASvRqnSA
                   aPPPVPKKPAkg+A+l+rerSl+  ++QRQEARKRL+AAKRAASvRqnSA
   mKIAA4162   925 APPPVPKKPAKGPAPLIRERSLE--SSQRQEARKRLMAAKRAASVRQNSA 972  

                   TESAdSIEIYiPEAQTRL<-*
                   TESA+SIEIYiPEAQTRL   
   mKIAA4162   973 TESAESIEIYIPEAQTRL    990  

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