hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mid/mid27006/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4159 ( 511 res) mid27006 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CUB Domain first found in C1r, C1s, uEGF, and bo 335.0 5.2e-96 3 ZnMc Zinc-dependent metalloprotease 67.6 1.6e-15 1 EGF_CA Calcium-binding EGF-like domain 52.2 6.8e-11 1 EGF Epidermal growth factor-like domain. 35.0 9.9e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnMc 1/1 8 125 .. 1 204 [] 67.6 1.6e-15 CUB 1/3 179 291 .. 1 144 [] 157.9 1e-42 CUB 2/3 292 404 .. 1 144 [] 180.3 1.9e-49 EGF 1/1 407 445 .. 1 32 [] 35.0 9.9e-06 EGF_CA 1/1 404 445 .. 1 34 [] 52.2 6.8e-11 CUB 3/3 448 510 .. 1 144 [] 6.1 0.046 Alignments of top-scoring domains: ZnMc: domain 1 of 1, from 8 to 125: score 67.6, E = 1.6e-15 *->gskrWpktvpYridryfrpsnytsslspeevkltstvreaiarAfqe s+ W+ + +i +++t++ ++ mKIAA4159 8 VSPSWSAQMRTAI-----LYSPTDPAARD------------------ 31 WsdvTclrFvevtsegtadiyIsFgsgdhvrigdsGcfDgpgGetlshag ++ ++ + c+ s++g mKIAA4159 32 ---------HPPE----------LAPPS-------RCC--------SYVG 47 rpgryyfpgigGdqhfslqkSdenwClgfgpgtnlfgvaaHElGHALGly r g gG q +s+ + +C++fg +++HElGH++G++ mKIAA4159 48 RRG-------GGPQAISI----GKNCDKFG-------IVVHELGHVIGFW 79 HeqsRsDGGdkRDnymyinyqnidpgsasernFdlssykidqddslggad He++R+D RD++++i+ +ni+pg +e+nF ++ ++ slg mKIAA4159 80 HEHTRPD----RDRHVSIVRENIQPG--QEYNFLKMEVQ--EVESLG--- 118 ipydYGs<-* yd+ s mKIAA4159 119 ETYDFDS 125 CUB: domain 1 of 3, from 179 to 291: score 157.9, E = 1e-42 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CG tl +s+ G ++SP+YPn+ Y +++CvW+Is++pG mKIAA4159 179 CGETLQDST------GNFSSPEYPNG-----YSAHMHCVWRISVTPG 214 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +i+L+Ft+ +dl s+ C+yDyve++DG + ++pl G mKIAA4159 215 EKIILNFTS---MDLYRSRL---------CWYDYVEVRDGFW-RKAPLRG 251 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< rfCG + p+ i S+ ++++v+F+s s+ ++GF a Y+a+ mKIAA4159 252 ----RFCGGKlPePIVSTDSRLWVEFRSSSNWV-----GKGFFAVYEAI 291 -* mKIAA4159 - - CUB: domain 2 of 3, from 292 to 404: score 180.3, E = 1.9e-49 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+++ ++ G+i+SPnYP++ Y +++ C+W+I++ +G mKIAA4159 292 CGGDVKKDN------GHIQSPNYPDD-----YRPSKVCIWRIQVSEG 327 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +++ L+F++ F++E +d+ C+yDy+e++DG+s +ss l+G mKIAA4159 328 FHVGLTFQS---FEIERHDS---------CAYDYLEVRDGHS-ESSNLIG 364 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< r+CG+e+p+ i S+s++++++FvsD+s++ k GF ++++ + mKIAA4159 365 ----RYCGYEkPdDIKSTSSRLWLKFVSDGSIN-----KAGFAVNFFKE 404 -* mKIAA4159 - - EGF: domain 1 of 1, from 407 to 445: score 35.0, E = 9.9e-06 *->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe eC+++++++C++ +C+++ +sy+C+C pGy++ ++++rCe mKIAA4159 407 ECSrpnrgGCEQ-------RCLntlgSYKCsCD-PGYELapdkrRCE 445 <-* mKIAA4159 - - EGF_CA: domain 1 of 1, from 404 to 445: score 52.2, E = 6.8e-11 *->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe +DEC++++++ C + +C N+ GSY+C+C+pGy+ +++r+Ce mKIAA4159 404 EVDECsrpnrgGCEQ-----RCLNtLGSYKCsCDPGYElapdkRRCE 445 <-* mKIAA4159 - - CUB: domain 3 of 3, from 448 to 510: score 6.1, E = 0.046 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg lt + G+itSP++P+ Yp+n++C+W+++ap mKIAA4159 448 CGGFLTKLN------GSITSPGWPKE-----YPPNKNCIWQLVAPTQ 483 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG yri+L+F+ F++E+ DG s mKIAA4159 484 YRISLQFDF---FETEG--------------------NDGVS-------- 502 ntearfCGsepiisSssNsmtvtFvsDssvqgkgktkrGFsarYsav<-* s + +s q mKIAA4159 503 -------------SPE----------RGSLQ---------------- 510 //