hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj68139/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4158 ( 761 res) mfj68139 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CCP Domain abundant in complement control protei 281.4 6.8e-80 5 CUB Domain first found in C1r, C1s, uEGF, and bo 204.0 1.4e-56 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CUB 1/3 11 120 .. 1 144 [] 0.4 0.15 CCP 1/5 124 179 .. 1 79 [] 50.3 2.6e-10 CUB 2/3 183 294 .. 1 144 [] 109.7 3.3e-28 CCP 2/5 299 356 .. 1 79 [] 54.8 1.2e-11 CUB 3/3 360 471 .. 1 144 [] 93.9 1.8e-23 CCP 3/5 477 532 .. 1 79 [] 68.9 6.4e-16 CCP 4/5 538 597 .. 1 79 [] 65.3 7.8e-15 CCP 5/5 605 662 .. 1 79 [] 66.7 3e-15 Alignments of top-scoring domains: CUB: domain 1 of 3, from 11 to 120: score 0.4, E = 0.15 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG C+ ++ +++ G++ SP P+sp + +l+C + Is+ pG mKIAA4158 11 CSWNFSGPE------GSLDSPTAPSSP----SDVGLDCFYYISVYPG 47 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiy.DGpsktsspll y +e+k + + ++ + +++ + G + l mKIAA4158 48 YGVEIKVEN-----ISLQEG------------ETITVEgLGGP--DPLPL 78 GntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav + + + ++i+S + ++ ++F+s + g F+ rY+a mKIAA4158 79 A----NQSFLLrGqVIRSPTHQAALRFQSLPLPAG----PGTFHFRYQAY 120 <-* mKIAA4158 - - CCP: domain 1 of 5, from 124 to 179: score 50.3, E = 2.6e-10 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C+ P + +G+vt++s + G +++++C +GY+l+ mKIAA4158 124 CHfPR---RPAYGDVTVTS----------LHPGGSAHFHCATGYQLK 157 GgsqpekSrestsstitCtsn....WspppsgplPtC<-* G + +tC++ +++ W++++ P C mKIAA4158 158 G-----------ARFLTCLNAtqpfWDSQE----PVC 179 CUB: domain 2 of 3, from 183 to 294: score 109.7, E = 3.3e-28 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+++ +++ G+i SP++P++ Y nnl+C W+++ap++ mKIAA4158 183 CGGVIRNATT-----GRIVSPGFPGN-----YSNNLTCHWLLEAPES 219 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +r++L+F++ l + D + i++G++++ p++ mKIAA4158 220 QRLHLHFEK---VSLAE-------------DDDRLIIRNGNNVEAPPVYD 253 ntearfCGse...p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa + + + ++++sS +++ +v+F++Dss+ + G +rY+a mKIAA4158 254 ----SYEVEYlpiEgLLSS-GRHFFVEFSTDSSGA-----AAGMALRYEA 293 v<-* + mKIAA4158 294 F 294 CCP: domain 2 of 5, from 299 to 356: score 54.8, E = 1.2e-11 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P +++G ++ss ++y++G+tv++sC+pGYtl mKIAA4158 299 CYeP----FVKYGNFSSSA--------PSYPVGTTVEFSCDPGYTLE 333 GgsqpekSrestsstitCtsn....WspppsgplPtC<-* g s +i+C + ++++W+ ++ P C mKIAA4158 334 QG----------SIIIECVDLhdpqWNETE----PAC 356 CUB: domain 3 of 3, from 360 to 471: score 93.9, E = 1.8e-23 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG C+g++t+s G++ SPn+P++ Y ++++C+W +++++ mKIAA4158 360 CSGEITDSA------GVVLSPNWPEP-----YGRGQDCIWGVHVEED 395 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +ri+L++ l ++ D +++yDG++ ++++lG mKIAA4158 396 KRIMLDIRV-----LRIGSG------------DVLTFYDGDD-LTARVLG 427 ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav +++G++++ ++++S +t++F+sD++++ +g + +GF ++++ v mKIAA4158 428 ----QYSGPRghFkLFTS-MADVTIQFQSDPGTSALG-YQQGFVIHFFEV 471 <-* mKIAA4158 - - CCP: domain 3 of 5, from 477 to 532: score 68.9, E = 6.4e-16 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv Cp++p +i+nG ++s+ ++ +G++vty+C pGY+ v mKIAA4158 477 CPeLP---EIPNGWKNPSQ--------PELVHGTVVTYQCYPGYQVV 512 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G ss++ C+ + +Ws P+C mKIAA4158 513 G-----------SSILMCQWDlsWSEDL----PSC 532 CCP: domain 4 of 5, from 538 to 597: score 65.3, E = 7.8e-15 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ d+e+ r ss +++++G tv+y C++G++l+ mKIAA4158 538 CHdPG---DVEHSRRLISS--------PKFPVGATVQYVCDQGFVLT 573 GgsqpekSrestsstitCtsn......WspppsgplPtC<-* G s+++tC + + ++++Ws++ P+C mKIAA4158 574 G-----------SAILTCHDRqagspkWSDRA----PKC 597 CCP: domain 5 of 5, from 605 to 662: score 66.7, E = 3e-15 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C+++ ++enG ++ + + ++ G t+++sC pGY+l+ mKIAA4158 605 CHgLS---APENGARSPEK--------RLHPAGATIHFSCAPGYVLK 640 GgsqpekSrestsstitCtsn....WspppsgplPtC<-* G ++i+C ++++++Ws+pp P+C mKIAA4158 641 G-----------QASIKCVPGhpshWSDPP----PIC 662 //