hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj68139/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4158  ( 761 res)   mfj68139

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sushi    Sushi domain (SCR repeat)                      219.4    5.5e-62   5
CUB      CUB domain                                     107.7    2.3e-28   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sushi      1/5     124   179 ..     1    64 []    31.6  1.9e-05
CUB        1/2     183   291 ..     1   116 []    55.1  1.5e-12
Sushi      2/5     299   356 ..     1    64 []    40.6  3.5e-08
CUB        2/2     360   468 ..     1   116 []    52.6  8.8e-12
Sushi      3/5     477   532 ..     1    64 []    67.2  3.4e-16
Sushi      4/5     538   597 ..     1    64 []    53.1  5.9e-12
Sushi      5/5     605   662 ..     1    64 []    48.7  1.3e-10

Alignments of top-scoring domains:
Sushi: domain 1 of 5, from 124 to 179: score 31.6, E = 1.9e-05
                   *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte
                      C +p+ +  G+v+++  + +   G ++++ C +GY+l+G + +tC+ 
   mKIAA4158   124    CHFPRRPAYGDVTVT--SLHP--GGSAHFHCATGYQLKGARFLTCL- 165  

                   dg.g.GgWsppllgelPkC<-*
                    + ++  W++++    P+C   
   mKIAA4158   166 -NaTqPFWDSQE----PVC    179  

CUB: domain 1 of 2, from 183 to 291: score 55.1, E = 1.5e-12
                   *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF
                      CGg++    ++G+i SP++P  +Y++n+ C W+++ap+ +r  +L+F
   mKIAA4158   183    CGGVI-RNATTGRIVSPGFPG-NYSNNLTCHWLLEAPESQR-LHLHF 226  

                   qdFdlEdhdgaCryDyvEirDGdpss.spllGrfCGgsgpPedirStsnr
                   +   l  +d+    D + ir G+     p++ ++   + p e + S++  
   mKIAA4158   227 EKVSLA-EDD----DRLIIRNGNNVEaPPVYDSYEVEYLPIEGLLSSGRH 271  

                   mlikFvsDasvqkrGFkAty<-*
                    +++F +D+s +++G +++y   
   mKIAA4158   272 FFVEFSTDSSGAAAGMALRY    291  

Sushi: domain 2 of 5, from 299 to 356: score 40.6, E = 3.5e-08
                   *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvG.sssitCt
                      C   P +  G++sss ++y++  G+tv+++C++GY+l+ +s  i C+
   mKIAA4158   299    CY-EPFVKYGNFSSSAPSYPV--GTTVEFSCDPGYTLEQgSIIIECV 342  

                   edg.g.GgWsppllgelPkC<-*
                     +  + +W+ ++    P C   
   mKIAA4158   343 --DlHdPQWNETE----PAC    356  

CUB: domain 2 of 2, from 360 to 468: score 52.6, E = 8.8e-12
                   *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF
                      C+g+  +t+s G+  SPn+P+ +Y + ++C+W + +++ +r ++L +
   mKIAA4158   360    CSGE--ITDSAGVVLSPNWPE-PYGRGQDCIWGVHVEEDKR-IMLDI 402  

                   qdFdlEdhdgaCryDyvEirDGdpssspllGrfCGgsgpPedirStsnrm
                     + +         D++  +DGd+ ++ +lG + G+ g    ++S    +
   mKIAA4158   403 RVLRIG------SGDVLTFYDGDDLTARVLGQYSGPRGHFKLFTS-MADV 445  

                   likFvsDasvqk....rGFkAty<-*
                   +i F+sD + ++ + + GF +++   
   mKIAA4158   446 TIQFQSDPGTSAlgyqQGFVIHF    468  

Sushi: domain 3 of 5, from 477 to 532: score 67.2, E = 3.4e-16
                   *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte
                      Cp++P+i+NG   +s+++  +  G++vty+C +GY+ vGss ++C+ 
   mKIAA4158   477    CPELPEIPNGWKNPSQPELVH--GTVVTYQCYPGYQVVGSSILMCQW 521  

                   dggGgWsppllgelPkC<-*
                   d   +Ws  l    P+C   
   mKIAA4158   522 D--LSWSEDL----PSC    532  

Sushi: domain 4 of 5, from 538 to 597: score 53.1, E = 5.9e-12
                   *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte
                      C +p+d+e+ r   s++++++  G tv+y C++G++l Gs+ +tC +
   mKIAA4158   538    CHDPGDVEHSRRLISSPKFPV--GATVQYVCDQGFVLTGSAILTCHD 582  

                   dg.g.GgWsppllgelPkC<-*
                      g+ +Ws +     PkC   
   mKIAA4158   583 RQaGsPKWSDRA----PKC    597  

Sushi: domain 5 of 5, from 605 to 662: score 48.7, E = 1.3e-10
                   *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte
                      C  +  +eNG  s++k+ ++   G t++++C +GY+l+G +si+C++
   mKIAA4158   605    CHGLSAPENGARSPEKRLHPA--GATIHFSCAPGYVLKGQASIKCVP 649  

                   dgg.GgWsppllgelPkC<-*
                   +  +++Ws p+    P+C   
   mKIAA4158   650 G-HpSHWSDPP----PIC    662  

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