hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj52041/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4156  ( 368 res)   mfj52041

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   122.3    5.2e-32   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6      65   104 ..     1    46 []    34.3  1.6e-05
WD40       2/6     151   190 ..     1    46 []    42.4  6.2e-08
WD40       3/6     193   230 ..     1    46 []     5.3       71
WD40       4/6     235   277 ..     1    46 []     6.4       47
WD40       5/6     280   322 ..     1    46 []    19.3     0.43
WD40       6/6     325   363 ..     1    46 []    14.7      2.3

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 65 to 104: score 34.3, E = 1.6e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++ ++++  ++   +++ +fsp+g      + ++s+s+D +i l+
   mKIAA4156    65    SfRVAKVFRENSD--KINCFDFSPNG------ETVISSSdDDSIVLY 103  

                   d<-*
                   d   
   mKIAA4156   104 D    104  

WD40: domain 2 of 6, from 151 to 190: score 42.4, E = 6.2e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k +r ++gH++  +V +++ sp +      + ++sgs D+tirlW
   mKIAA4156   151    DnKYIRYFPGHSK--RVVALSMSPVD------DTFISGSlDKTIRLW 189  

                   d<-*
                   d   
   mKIAA4156   190 D    190  

WD40: domain 3 of 6, from 193 to 230: score 5.3, E = 71
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++   ++   +  pV+s  f+p g       ++a+g +   ++l+
   mKIAA4156   193    SpNCQGLMHLQGK--PVCS--FDPEG------LIFAAGVnSEMVKLY 229  

                   d<-*
                   d   
   mKIAA4156   230 D    230  

WD40: domain 4 of 6, from 235 to 277: score 6.4, E = 47
                   *->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgs.Dgtirl
                      ++ + +t+k   + +++ t+++fs dg      +l++ + + + irl
   mKIAA4156   235    DkGPFATFKMQYDRtCEWTGLKFSNDG------KLILISTnGSFIRL 275  

                   Wd<-*
                    d   
   mKIAA4156   276 ID    277  

WD40: domain 5 of 6, from 280 to 322: score 19.3, E = 0.43
                   *->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgs.Dgtirl
                      ++ + +t+ g  ++++  +  +f pd+      +++  gs+Dg+i++
   mKIAA4156   280    KgVVMHTFGGYANSkAVTLEASFTPDS------QFIMIGSeDGKIHV 320  

                   Wd<-*
                   W+   
   mKIAA4156   321 WN    322  

WD40: domain 6 of 6, from 325 to 363: score 14.7, E = 2.3
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++  +++l++ Htg  p+t+++f+p          +as++++    +
   mKIAA4156   325    SgIKVAVLDgKHTG--PITCLQFNPKF------MTFASACsN--MAF 361  

                   Wd<-*
                   W    
   mKIAA4156   362 WL    363  

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