hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj52041/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4156  ( 368 res)   mfj52041

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        88.5    1.4e-22   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4      67   104 ..     1    38 []    31.7  1.7e-05
WD40       2/4     153   190 ..     1    38 []    39.5  7.4e-08
WD40       3/4     285   322 ..     1    38 []    11.4      7.8
WD40       4/4     327   365 ..     1    38 []     6.1       36

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 67 to 104: score 31.7, E = 1.7e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       + +v++  ++ ++c +fsp+ g++++s+S+D +i ++d   
   mKIAA4156    67    RVAKVFrENSDKINCFDFSPN-GETVISSSDDDSIVLYD    104  

WD40: domain 2 of 4, from 153 to 190: score 39.5, E = 7.4e-08
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + ++ ++gH++ V +++ sp    +++sgS D+ti++Wd   
   mKIAA4156   153    KYIRYFpGHSKRVVALSMSPV-DDTFISGSLDKTIRLWD    190  

WD40: domain 3 of 4, from 285 to 322: score 11.4, E = 7.8
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                           +   ++     +f pd ++++  gS+Dg+i++W+   
   mKIAA4156   285    HTFGGYaNSKAVTLEASFTPD-SQFIMIGSEDGKIHVWN    322  

WD40: domain 4 of 4, from 327 to 365: score 6.1, E = 36
                   *->eclavl..gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +avl++ Ht+p+tc+ f+p    ++as++++    +     
   mKIAA4156   327    IKVAVLdgKHTGPITCLQFNPK-FMTFASACSNMAFWLPT    365  

//