hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj33105/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4155  ( 747 res)   mfj33105

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF1055  Domain of Unknown Function (DUF1055)           319.3    4.6e-92   1
UCH      Ubiquitin carboxyl-terminal hydrolase          185.8    7.1e-52   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1055    1/1      95   240 ..     1   147 []   319.3  4.6e-92
UCH        1/1     312   578 ..     1   273 []   185.8  7.1e-52

Alignments of top-scoring domains:
DUF1055: domain 1 of 1, from 95 to 240: score 319.3, E = 4.6e-92
                   *->eLketLiEgvDYvLvPqEvWrkLvsWYgleeGGPpieRKVIeqGlyq
                      +Lke+Li+++DYvLvP+E+W+kL++WYg++eG++pi+RKV+e+Gl++
   mKIAA4155    95    TLKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFV 141  

                   ksysVEVYpleLkLtdgrDssksiTiRlSKkdsIgelyrevCelfsveqe
                   k+++VEVY+leLkL++++D+++++++++SK+d+I ++++e+++lf++++e
   mKIAA4155   142 KHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAE 191  

                   ketRiWdyyekkkyelLddldekTvedAgLqmdQdIliEarkvDGtwsSq
                   +etR+W++y++++ye+L++ld +T++dAgL+++Q+++iE +++DGtw++q
   mKIAA4155   192 RETRLWNKYMSNTYEQLSKLD-NTIQDAGLYQGQVLVIEPQNEDGTWPRQ 240  

                   <-*
                      
   mKIAA4155     -     -    

UCH: domain 1 of 1, from 312 to 578: score 185.8, E = 7.1e-52
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl
                      pg++GL NlGNTC+mNS+LQcL+++ pl++y+l+d+ye ein++npl
   mKIAA4155   312    PGLCGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPL 358  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsg.yksvvpsplkflqfkttlgkineefsgym
                   g+kg++++a+a L+++++sg+++ v+p+      fkt++g+++++fsgy+
   mKIAA4155   359 GMKGEIAEAYAELIKQMWSGrDTHVAPRM-----FKTQVGRFAPQFSGYQ 403  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxx xxx xxxxxxx
                   QqDAhEFllfLLdgLhedlnrvnkkpytepe.sdkrpd.kaa.eawknhs
                   QqD++E+l+f+LdgLhedlnrv+kkpy+ep+++++rpd  +a+eaw+nh 
   mKIAA4155   404 QQDSQELLAFILDGLHEDLNRVKKKPYLEPKdANGRPDaVVAkEAWENHR 453  

                RF xxxxxxxxxxxxxxxxx                  xxxxxxxxxxxxxxx
                   lrneslitdlFqGqles..................rlkisrLPpiLiihL
                   lrn+s+i+d F+G ++s+  ++++ + + + ++ + l       +L + L
   mKIAA4155   454 LRNDSVIVDTFHGLFKStlvcpecakvsvtfdpfcYL-------TLPLPL 496  

                RF xxxxxxxxx     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   KRFkydget.....gmnkKindkVefPleLdlssyctaepplkYeLyaVv
                   K+   ++    + + +++ i ++V+ Pl   +s++c a      +L ++ 
   mKIAA4155   497 KKDRIMEVFlvpadPQCRPIQYRVTVPLMGAISDLCEA----LSKLSGIA 542  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   vHsGsslsgGHYiayikkkkknnkWykfDDekVsevseeevlersssAYi
                       +       +++++++  +       De  s +++ ++        i
   mKIAA4155   543 AENMV-------VTDVYNHRFHKIFQM--DEGLSHITPRDD--------I 575  

                RF xxx   
                   LFY<-*
                    +Y   
   mKIAA4155   576 FVY    578  

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