hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj02503/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4154  ( 702 res)   mpj02503

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UBX      Domain present in ubiquitin-regulatory prote   125.6    5.4e-33   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBX        1/1     618   700 ..     1    97 []   125.6  5.4e-33

Alignments of top-scoring domains:
UBX: domain 1 of 1, from 618 to 700: score 125.6, E = 5.4e-33
                   *->pkknpsisqcrlQiRlpdGsrlvrkFpssetLeevyefVeLqkseal
                      +++n++ ++++l+iR+p+G++l+r+F +s++L++v++fV     +++
   mKIAA4154   618    KEENAE-PVSKLRIRTPSGEFLERRFLASNKLQIVFDFV-----ASK 658  

                   tdgndpaevynadFtLnspfPRrtftkdDelKklleldellPsssLlLep
                   ++++d+       F+L+s+fPRr++t++D++K+lle+ +l+P+++L+L++
   mKIAA4154   659 GFPWDE-------FKLLSTFPRRDVTQLDPNKSLLEV-NLFPQETLFLQA 700  

                   <-*
                      
   mKIAA4154     -     -    

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