hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00914/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4149  ( 906 res)   mfj00914

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HOX      Homeodomain                                    182.8    3.3e-50   5
ZnF_C2H2 zinc finger                                     29.4     0.0005   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/2     103   126 ..     1    23 []    17.2      2.4
ZnF_C2H2   2/2     135   158 ..     1    23 []    17.0      2.7
HOX        1/5     317   379 ..     1    63 []    29.0   0.0003
HOX        2/5     497   559 ..     1    63 []    54.0  1.9e-11
HOX        3/5     602   663 ..     1    63 []    24.9  0.00092
HOX        4/5     693   755 ..     1    63 []    53.5  2.7e-11
HOX        5/5     810   865 ..     1    63 []    25.0   0.0009

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 2, from 103 to 126: score 17.2, E = 2.4
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C +++++ + ++ H+ + H   
   mKIAA4149   103    YECKY-CTFQTPDLnMFTFHVDsEH    126  

ZnF_C2H2: domain 2 of 2, from 135 to 158: score 17.0, E = 2.7
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C + C++ +++++aL +H  + H   
   mKIAA4149   135    YVCVE-CNFLTKRYdALSEHNLkYH    158  

HOX: domain 1 of 5, from 317 to 379: score 29.0, E = 0.0003
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +  + ++   +    L + ++k pYP+ +e+  L+++ + te+q+k+
   mKIAA4149   317    NSIPTYNAALDNNPLLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKI 363  

                   WFQNRRakwkrqekkk<-*
                   WF+ +R k+  ++ ++   
   mKIAA4149   364 WFSAQRLKHGVSWTPE    379  

HOX: domain 2 of 5, from 497 to 559: score 54.0, E = 1.9e-11
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +   R   t+eQl+eL+ ++ kn++P  +e+++L k +gLt+  +k 
   mKIAA4149   497    SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKK 543  

                   WFQNRRakwkrqekkk<-*
                   WF+  R+ +++++  +   
   mKIAA4149   544 WFSDTRYNQRNSKSNQ    559  

HOX: domain 3 of 5, from 602 to 663: score 24.9, E = 0.00092
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +++ +   t eQl++L+++F  +  ++ ee  +L ++++Lt+r +  
   mKIAA4149   602    PQKFKE-KTAEQLRALQASFLNSSVLTDEEVNRLRAQTKLTRREIDA 647  

                   WFQNRRakwkrqekkk<-*
                   WF  + +    + +k    
   mKIAA4149   648 WFTEKNKTKALKDEKI    663  

HOX: domain 4 of 5, from 693 to 755: score 53.5, E = 2.7e-11
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +  k +  tpeQl+ L+ +F ++++Ps+ee ++LA+e gL ++ +  
   mKIAA4149   693    GTGKICKKTPEQLHMLKSAFVRTQWPSAEEYDKLAEESGLARTDIVS 739  

                   WFQNRRakwkrqekkk<-*
                   WF   R+ wk+ + k+   
   mKIAA4149   740 WFGDTRYAWKNGNLKW    755  

HOX: domain 5 of 5, from 810 to 865: score 25.0, E = 0.0009
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      k ++ t+       +L++++ k++++++++++eL ++ ++  +qV+ 
   mKIAA4149   810    KFKTGTA-------ILKDYYLKHKFLNEQDLDELVNRSHMGYEQVRE 849  

                   WFQNRRakwkrqekkk<-*
                   WF  R +++    +     
   mKIAA4149   850 WFAERQRRSELGIELF    865  

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