hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00914/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4149  ( 906 res)   mfj00914

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Homeobox Homeobox domain                                 29.0    1.3e-06   2
zf-C2H2  Zinc finger, C2H2 type                          20.3      0.046   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/2     103   126 ..     1    24 []    11.9        7
zf-C2H2    2/2     135   158 ..     1    24 []    12.8      5.8
Homeobox   1/2     501   554 ..     1    57 []    17.1  3.9e-05
Homeobox   2/2     696   750 ..     1    57 []    11.8  0.00018

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 2, from 103 to 126: score 11.9, E = 7
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C+ +C     +   ++ H  ++H   
   mKIAA4149   103    YECK-YCTFQTPDLNMFTFHVDSeH    126  

zf-C2H2: domain 2 of 2, from 135 to 158: score 12.8, E = 5.8
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C  +C+   +r + L  H  + H   
   mKIAA4149   135    YVCV-ECNFLTKRYDALSEHNLKyH    158  

Homeobox: domain 1 of 2, from 501 to 554: score 17.1, E = 3.9e-05
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r k    t+eQl eL+  + kn+ P  +e+ +L k +gLt+  +k W
   mKIAA4149   501    RAKK---TKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKW 544  

                   FQNRRaKwKk<-*
                   F   R+ ++    
   mKIAA4149   545 FSDTRYNQRN    554  

Homeobox: domain 2 of 2, from 696 to 750: score 11.8, E = 0.00018
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      +      tpeQl  L+ +F +++ Ps+ee  +LA++ gL  + +  W
   mKIAA4149   696    KICK--KTPEQLHMLKSAFVRTQWPSAEEYDKLAEESGLARTDIVSW 740  

                   FQNRRaKwKk<-*
                   F   R+ wK    
   mKIAA4149   741 FGDTRYAWKN    750  

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