hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mni/mni01012/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4147 ( 506 res) mni01012 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_CC Leucine-rich repeat - CC (cysteine-containin 232.3 4e-65 12 FBOX A Receptor for Ubiquitination Targets 42.8 4.5e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FBOX 1/1 98 138 .. 1 41 [] 42.8 4.5e-08 LRR_CC 1/12 160 185 .. 1 26 [] 20.5 0.23 LRR_CC 2/12 186 211 .. 1 26 [] 12.1 21 LRR_CC 3/12 212 237 .. 1 26 [] 28.5 0.00094 LRR_CC 4/12 238 263 .. 1 26 [] 32.6 5.6e-05 LRR_CC 5/12 264 289 .. 1 26 [] 22.0 0.085 LRR_CC 6/12 290 315 .. 1 26 [] 24.1 0.019 LRR_CC 7/12 316 341 .. 1 26 [] 27.9 0.0014 LRR_CC 8/12 342 367 .. 1 26 [] 30.1 0.00031 LRR_CC 9/12 368 393 .. 1 26 [] 24.5 0.015 LRR_CC 10/12 394 419 .. 1 26 [] 37.3 2.1e-06 LRR_CC 11/12 423 447 .. 1 26 [] 0.1 7e+02 LRR_CC 12/12 448 473 .. 1 26 [] 17.1 2.5 Alignments of top-scoring domains: FBOX: domain 1 of 1, from 98 to 138: score 42.8, E = 4.5e-08 *->LPieileeIlskLdpkdllrlrkVsrkwrslidshdfwfkr<-* LP e+l+ I+s+Ld l+r+ +Vsr w+ l + ++w+++ mKIAA4147 98 LPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRI 138 LRR_CC: domain 1 of 12, from 160 to 185: score 20.5, E = 0.23 *->CpnLkeLdLsgCsniTDeglqaLakg<-* L++L+L+gC ++D++l+ +a++ mKIAA4147 160 GGFLRKLSLRGCLGVGDNALRTFAQN 185 LRR_CC: domain 2 of 12, from 186 to 211: score 12.1, E = 21 *->CpnLkeLdLsgCsniTDeglqaLakg<-* C+n++ L+L gC++ TD ++ +L+k mKIAA4147 186 CRNIEVLSLNGCTKTTDATCTSLSKF 211 LRR_CC: domain 3 of 12, from 212 to 237: score 28.5, E = 0.00094 *->CpnLkeLdLsgCsniTDeglqaLakg<-* C +L++LdL +C+ iT+ +l aL+ g mKIAA4147 212 CSKLRHLDLASCTSITNMSLKALSEG 237 LRR_CC: domain 4 of 12, from 238 to 263: score 32.6, E = 5.6e-05 *->CpnLkeLdLsgCsniTDeglqaLakg<-* Cp L+ L++s+C ++T g+qaL++g mKIAA4147 238 CPLLEQLNISWCDQVTKDGIQALVRG 263 LRR_CC: domain 5 of 12, from 264 to 289: score 22.0, E = 0.085 *->CpnLkeLdLsgCsniTDeglqaLakg<-* C Lk L L+gC+++ De+l +++ mKIAA4147 264 CGGLKALFLKGCTQLEDEALKYIGAH 289 LRR_CC: domain 6 of 12, from 290 to 315: score 24.1, E = 0.019 *->CpnLkeLdLsgCsniTDeglqaLakg<-* Cp L +L+L C +iTDegl+ +++g mKIAA4147 290 CPELVTLNLQTCLQITDEGLITICRG 315 LRR_CC: domain 7 of 12, from 316 to 341: score 27.9, E = 0.0014 *->CpnLkeLdLsgCsniTDeglqaLakg<-* C++L++L+ sgCsniTD l+aL+++ mKIAA4147 316 CHKLQSLCASGCSNITDAILNALGQN 341 LRR_CC: domain 8 of 12, from 342 to 367: score 30.1, E = 0.00031 *->CpnLkeLdLsgCsniTDeglqaLakg<-* Cp+L+ L + +Cs++TD+g+ La++ mKIAA4147 342 CPRLRILEVARCSQLTDVGFTTLARN 367 LRR_CC: domain 9 of 12, from 368 to 393: score 24.5, E = 0.015 *->CpnLkeLdLsgCsniTDeglqaLakg<-* C+ L++ dL C++iTD++l+ L+ mKIAA4147 368 CHELEKMDLEECVQITDSTLIQLSIH 393 [output cut off at A = 10 top alignments] //