hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mni/mni01012/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4147  ( 506 res)   mni01012

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
F-box    F-box domain                                    39.4    8.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
F-box      1/1      95   140 ..     1    44 []    39.4  8.2e-08

Alignments of top-scoring domains:
F-box: domain 1 of 1, from 95 to 140: score 39.4, E = 8.2e-08
                   *->lldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kll<
                         LP elll+I+s+Ld   l+r+++VS+ w+ l+ + ++w ++ l 
   mKIAA4147    95    NKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGsNWQrIDL  140  

                   -*
                     
   mKIAA4147     -    -    

//