hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msj/msj06308/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4146  ( 616 res)   msj06308

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                 46.2    4.2e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/2     532   562 ..     1    30 []    32.3  6.6e-05
ANK        2/2     566   595 ..     1    30 []    14.0       22

Alignments of top-scoring domains:
ANK: domain 1 of 2, from 532 to 562: score 32.3, E = 6.6e-05
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      d rT+LH+Aa++g++evvk+L+++   ++ +   
   mKIAA4146   532    DSRTALHVAAAEGHIEVVKFLIEACKvNPFV    562  

ANK: domain 2 of 2, from 566 to 595: score 14.0, E = 22
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+ pL  A++ ++levvklL d+  +  +   
   mKIAA4146   566    WGNIPLDDAVQFNHLEVVKLLQDYHDSYLL    595  

//