hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj06308/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4146  ( 616 res)   msj06308

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Glutaminase Glutaminase                                 604.2   7.8e-178   1
Ank         Ankyrin repeat                               44.0    3.4e-09   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Glutaminase   1/1     191   477 ..     1   292 []   604.2 7.8e-178
Ank           1/2     532   565 ..     1    33 []    32.9  7.3e-06
Ank           2/2     566   599 ..     1    33 []    11.0      5.1

Alignments of top-scoring domains:
Glutaminase: domain 1 of 1, from 191 to 477: score 604.2, E = 7.8e-178
                   *->GkvAdYIPaLakvdpdllGiavvtvDGqvysaGDadepFslQSISKV
                      GkvA YIP Lak +pdl+G++++tvDGq++s+G++++pF+lQS++K+
   mKIAA4146   191    GKVAAYIPHLAKSNPDLWGVSLCTVDGQRHSVGHTKIPFCLQSCVKP 237  

                   ftlalalqdvGeeyvwqrVGkEPSGdpFNSivqLEtekpGkPrNPmINAG
                   +t+a+ ++ +G++yv++ VGkEPSG+++N++++ E+     P+NPm+NAG
   mKIAA4146   238 LTYAISVSTLGTDYVHKFVGKEPSGLRYNKLSLNEEGI---PHNPMVNAG 284  

                   AIvVtsllkgrtsieerldflLsflrklaGneeitideeVaqSEreTadR
                   AIvV+sl+k+ ++++e++df+L++l+k+aGne ++++++++qSE eT+dR
   mKIAA4146   285 AIVVSSLIKMDCNKAEKFDFVLQYLNKMAGNEFMGFSNATFQSEKETGDR 334  

                   NrAlAylmkskGnlehdvelvaaLdlYfrqCalemsCedLAvagltLAng
                   N+A++y++k+k++++++v+++aaLdlYf++C++e++Ce+ +v+++tLAng
   mKIAA4146   335 NYAIGYYLKEKKCFPKGVDMMAALDLYFQLCSVEVTCESGSVMAATLANG 384  

                   GvnPitgerVvspdvarrikAlMlTCGmYdaSGdFAyrVGLPaKSGVgGG
                   G++Pitge+V+s++++r++++lM++CGmYd+SG+FA++VGLPaKS V+G+
   mKIAA4146   385 GICPITGESVLSAEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSAVSGA 434  

                   IlaVVPgpsvmgiavwSPaLDeaGNSvaGvaaLekLaqrtglsiF<-*
                   Il+VVP+  vmg+++ SP+LD++GNS++G+ +++kL+++++++++   
   mKIAA4146   435 ILLVVPN--VMGMMCLSPPLDKLGNSQRGINFCQKLVSLFNFHNY    477  

Ank: domain 1 of 2, from 532 to 565: score 32.9, E = 7.3e-06
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      d +T+LH+Aa  g++evvk+L++ +  ++ ++d+   
   mKIAA4146   532    DSRTALHVAAAEGHIEVVKFLIEaCKVNPFVKDR    565  

Ank: domain 2 of 2, from 566 to 599: score 11.0, E = 5.1
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                       G+ PL  A++ ++levvklL + +   l   +    
   mKIAA4146   566    WGNIPLDDAVQFNHLEVVKLLQDyHDSYLLSETQ    599  

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