hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01377/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4145  ( 363 res)   mbg01377

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HOLI     hormone ligand-binding domain in nuclear rec   135.9    4.4e-36   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HOLI       1/1     155   321 ..     1   158 []   135.9  4.4e-36

Alignments of top-scoring domains:
HOLI: domain 1 of 1, from 155 to 321: score 135.9, E = 4.4e-36
                   *->ewwerdllltvewaksfpfFreLsleDqiiLLksfwfelllLesayr
                      e+++r l+l++ wa+s+p F+ L ++  ++L++++w el+ L++a++
   mKIAA4145   155    ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQC 201  

                   sa.lkksdlllfpdgtyirpd...........lf.pfldrildelv.plr
                   +  +   +++l+       ++ ++++ ++++ +  +++++ l+e+++++ 
   mKIAA4145   202 AQvMSL-STILAAIVNHLQNSiqedklsgdriKQvMEHIWKLQEFCnSMA 250  

                   eLkltdeEyalLkaillfnpagpglseegqeiveklqeklsnaLhdYylk
                   +L+++ +Eya+Lkai+lf+p++pgl++   + +ek+qek + +L+dY++k
   mKIAA4145   251 KLDIDGYEYAYLKAIVLFSPDHPGLTG--TSQIEKFQEKAQMELQDYVQK 298  

                   nypmpnypsRfakLllllpslrkis<-*
                   +y   ++  R+a++l +lp+lr +s   
   mKIAA4145   299 TYS--EDTYRLARILVRLPALRLMS    321  

//