hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01377/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4145  ( 363 res)   mbg01377

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Hormone_recep Ligand-binding domain of nuclear hormon   154.7    1.6e-42   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Hormone_recep   1/1     158   346 ..     1   200 []   154.7  1.6e-42

Alignments of top-scoring domains:
Hormone_recep: domain 1 of 1, from 158 to 346: score 154.7, E = 1.6e-42
                   *->frqlllivewaKslPfFkeLsleDQiiLLkhswlelllLrlayrsys
                      +r l+l+++wa+s+P F+ L ++   +L++++w el+ L+la+++  
   mKIAA4145   158    SRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQV 204  

                   lkkat..asdtllfpdGtdipresl....gsselierifeflvklrvnil
                   +  +t  a+ + ++++  + ++ s+++ ++++e+i +++ef++++     
   mKIAA4145   205 MSLSTilAAIVNHLQNSIQEDKLSGdrikQVMEHIWKLQEFCNSMA---- 250  

                   aplreLkldeeEyalLkAIvlfnPsdvpgLsesareiveklqekylsaLl
                       +L++d  Eya+LkAIvlf+P d pgL+  +  ++ek qek++ +L+
   mKIAA4145   251 ----KLDIDGYEYAYLKAIVLFSP-DHPGLTGTS--QIEKFQEKAQMELQ 293  

                   qycllnypdtlssdgpsRFakLLlllpvlrsiskdllehlfflkqlfnvp
                   +y++++y      +++ R+a++L +lp+lr +s+++ e+lff  +++ + 
   mKIAA4145   294 DYVQKTYS-----EDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NV 337  

                   kvppLlkei<-*
                   ++++++++i   
   mKIAA4145   338 SIDSIIPYI    346  

//