hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm06020/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4142 ( 1639 res) mpm06020 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LY Low-density lipoprotein-receptor YWTD domain 799.7 6.4e-236 20 LDLa Low-density lipoprotein receptor domain clas 149.7 2.9e-40 3 EGF Epidermal growth factor-like domain. 31.3 0.00013 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LY 1/20 79 121 .. 1 51 [] 15.7 2.1 LY 2/20 124 166 .. 1 51 [] 59.3 5.1e-13 LY 3/20 167 210 .. 1 51 [] 63.3 3.2e-14 LY 4/20 211 253 .. 1 51 [] 59.7 3.8e-13 LY 5/20 254 295 .. 1 51 [] 31.8 9.3e-05 EGF 1/5 322 361 .. 1 32 [] 21.3 0.13 LY 6/20 389 431 .. 1 51 [] 41.4 1.2e-07 LY 7/20 432 474 .. 1 51 [] 68.3 9.6e-16 LY 8/20 475 518 .. 1 51 [] 67.4 1.8e-15 LY 9/20 519 561 .. 1 51 [] 67.7 1.5e-15 LY 10/20 562 602 .. 1 51 [] 31.9 8.7e-05 EGF 2/5 628 665 .. 1 32 [] 20.0 0.32 LY 11/20 691 733 .. 1 51 [] 41.2 1.4e-07 LY 12/20 734 776 .. 1 51 [] 61.2 1.3e-13 LY 13/20 777 820 .. 1 51 [] 51.7 9.4e-11 LY 14/20 821 862 .. 1 51 [] 35.3 8.3e-06 LY 15/20 863 902 .. 1 51 [] 20.1 0.3 EGF 3/5 929 966 .. 1 32 [] 17.7 1.6 LY 16/20 993 1034 .. 1 51 [] 21.7 0.1 LY 17/20 1040 1082 .. 1 51 [] 14.4 3.1 LY 18/20 1083 1127 .. 1 51 [] 37.1 2.3e-06 LY 19/20 1128 1170 .. 1 51 [] 44.2 1.7e-08 LY 20/20 1171 1211 .. 1 51 [] 15.1 2.5 EGF 4/5 1240 1278 .. 1 32 [] 19.8 0.37 LDLa 1/3 1282 1321 .. 1 47 [] 60.1 2.8e-13 LDLa 2/3 1322 1358 .. 1 47 [] 45.4 7.6e-09 EGF 5/5 1309 1373 .. 1 32 [] -13.9 4.1e+03 LDLa 3/3 1359 1396 .. 1 47 [] 60.1 2.9e-13 Alignments of top-scoring domains: LY: domain 1 of 20, from 79 to 121: score 15.7, E = 2.1 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl ++v sgl+ ++ +++ + +g +YWtD++++ I l mKIAA4142 79 STIVASGLeDAAA-VDFQFSKG--AVYWTDVSEE------AIKQTYL 116 dGtnr<-* + t+ mKIAA4142 117 NQTGA 121 LY: domain 2 of 20, from 124 to 166: score 59.3, E = 5.1e-13 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl + +v sgl +P+g lA Dw+++ +lYWtD++++ +Ie+anl mKIAA4142 124 QNIVISGLvSPDG-LACDWVGK--KLYWTDSETN------RIEVANL 161 dGtnr<-* +Gt r mKIAA4142 162 NGTSR 166 LY: domain 3 of 20, from 167 to 210: score 63.3, E = 3.2e-14 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl +vl+ ++l++Pr+ +A+D+ +g ++YWtDwg+ ++Iera + mKIAA4142 167 KVLFWQDLdQPRA-IALDPAHG--YMYWTDWGEA-----PRIERAGM 205 dGtnr<-* dG++r mKIAA4142 206 DGSTR 210 LY: domain 4 of 20, from 211 to 253: score 59.7, E = 3.8e-13 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl +++v+s++ wP+g l++D e+ +lYW+D++l I ranl mKIAA4142 211 KIIVDSDIyWPNG-LTIDLEEQ--KLYWADAKLS------FIHRANL 248 dGtnr<-* dG++r mKIAA4142 249 DGSFR 253 LY: domain 5 of 20, from 254 to 295: score 31.8, E = 9.3e-05 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl + +v+ +l++P +A+ ++ lYWtDw ++ ++ ++++ mKIAA4142 254 QKVVEGSLtHP---FALTLSGD--TLYWTDWQTR-----SIHACNKW 290 dGtnr<-* +G r mKIAA4142 291 TGEQR 295 EGF: domain 1 of 5, from 322 to 361: score 21.3, E = 0.13 *->eCa....pCsnGgtEqnGtCi......sytC.CpgpGytg.....rC +C++++++Cs+ C+ +++++ y+C Cp G ++++++++C mKIAA4142 322 PCEedngGCSH-------LCLlsprepFYSCaCP-TGVQLqdngkTC 360 e<-* + mKIAA4142 361 K 361 LY: domain 6 of 20, from 389 to 431: score 41.4, E = 1.2e-07 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl vl ++++ + +++D++eg ++YWtD + + I+ra l mKIAA4142 389 IVLQVGDIrHAIA-IDYDPLEG--YVYWTDDEVR------AIRRAYL 426 dGtnr<-* dG++ mKIAA4142 427 DGSGA 431 LY: domain 7 of 20, from 432 to 474: score 68.3, E = 9.6e-16 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl ++lv++ ++ P+g +AvDw+++ +lYWtD g+d +Ie+ +l mKIAA4142 432 QTLVNTEInDPDG-IAVDWVAR--NLYWTDTGTD------RIEVTRL 469 dGtnr<-* +Gt r mKIAA4142 470 NGTSR 474 LY: domain 8 of 20, from 475 to 518: score 67.4, E = 1.8e-15 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl ++lvs++l+ Pr+ ++++++ g ++YWtDwg++ +kIe+anl mKIAA4142 475 KILVSEDLdEPRA-IVLHPVMG--LMYWTDWGEN-----PKIECANL 513 dGtnr<-* dG +r mKIAA4142 514 DGRDR 518 LY: domain 9 of 20, from 519 to 561: score 67.7, E = 1.5e-15 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl +vlv+++l+wP+g lA+D eg +lYW D+++d kIe++n+ mKIAA4142 519 HVLVNTSLgWPNG-LALDLQEG--KLYWGDAKTD------KIEVINI 556 dGtnr<-* dGt r mKIAA4142 557 DGTKR 561 [output cut off at A = 10 top alignments] //